LINC02023

Summary

LINC02023 (long intergenic non-protein coding RNA 2023, HGNC:52858) is a long non-coding RNA gene on chromosome 3q26.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52858
Approved symbol	LINC02023
Name	long intergenic non-protein coding RNA 2023
Location	3q26.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239205
Ensembl biotype	lncRNA
Entrez	101928405
RNAcentral	URS0000540B0B — lncRNA, 1948 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000472120, ENST00000849203

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000472120 — 2 exons

Exon	Start	End
ENSE00001914284	165150006	165151793
ENSE00001958287	165157903	165158062

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 75.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0088 / max 8.5386, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
45424	0.0088	2

Top tissues by expression

162 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.85	silver quality
rectum	UBERON:0001052	73.06	gold quality
buccal mucosa cell	CL:0002336	67.20	gold quality
colonic epithelium	UBERON:0000397	66.21	silver quality
transverse colon	UBERON:0001157	65.42	gold quality
mucosa of transverse colon	UBERON:0004991	63.52	gold quality
colon	UBERON:0001155	63.04	gold quality
large intestine	UBERON:0000059	62.81	gold quality
intestine	UBERON:0000160	60.06	gold quality
mucosa of sigmoid colon	UBERON:0004993	59.47	gold quality
colonic mucosa	UBERON:0000317	59.46	gold quality
ventricular zone	UBERON:0003053	58.35	silver quality
ganglionic eminence	UBERON:0004023	56.32	silver quality
muscle layer of sigmoid colon	UBERON:0035805	55.21	gold quality
muscle of leg	UBERON:0001383	54.62	silver quality
islet of Langerhans	UBERON:0000006	48.64	silver quality
monocyte	CL:0000576	48.61	silver quality
vermiform appendix	UBERON:0001154	47.02	gold quality
smooth muscle tissue	UBERON:0001135	45.52	gold quality
upper leg skin	UBERON:0004262	45.40	silver quality
skin of leg	UBERON:0001511	45.18	silver quality
tibial artery	UBERON:0007610	43.88	silver quality
caecum	UBERON:0001153	43.59	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
anatomical system	UBERON:0000467	43.17	gold quality
multicellular organism	UBERON:0000468	42.98	gold quality
material anatomical entity	UBERON:0000465	42.96	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
lymph node	UBERON:0000029	42.32	gold quality
blood	UBERON:0000178	42.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.