LINC02024

Summary

LINC02024 (long intergenic non-protein coding RNA 2024, HGNC:52859) is a long non-coding RNA gene on chromosome 3q13.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52859
Approved symbol	LINC02024
Name	long intergenic non-protein coding RNA 2024
Location	3q13.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241213
Ensembl biotype	lncRNA
Entrez	105374057
RNAcentral	URS0002A537A0 — lncRNA, 1266 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 41 — 41 lncRNA

ENST00000462528, ENST00000493545, ENST00000496994, ENST00000656611, ENST00000659069, ENST00000660985, ENST00000662843, ENST00000665283, ENST00000665643, ENST00000797345, ENST00000797346, ENST00000797347, ENST00000797348, ENST00000797349, ENST00000797350, ENST00000797351, ENST00000797352, ENST00000797353, ENST00000797354, ENST00000797355, ENST00000797356, ENST00000797357, ENST00000797358, ENST00000797359, ENST00000797360, ENST00000797361, ENST00000797362, ENST00000797363, ENST00000797364, ENST00000797365, ENST00000797366, ENST00000797367, ENST00000797368, ENST00000797369, ENST00000797370, ENST00000797371, ENST00000797372, ENST00000797373, ENST00000797374, ENST00000797375, ENST00000797376

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000462528 — 2 exons

Exon	Start	End
ENSE00001817152	117682914	117682999
ENSE00001830008	117688507	117688861

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 89.69.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0108 / max 9.9239, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
202891	0.0108	3

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	89.69	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.15	gold quality
adrenal tissue	UBERON:0018303	77.13	gold quality
left testis	UBERON:0004533	76.48	gold quality
testis	UBERON:0000473	76.45	gold quality
right testis	UBERON:0004534	75.95	gold quality
ganglionic eminence	UBERON:0004023	66.59	gold quality
colonic epithelium	UBERON:0000397	60.97	silver quality
sural nerve	UBERON:0015488	59.93	silver quality
stomach	UBERON:0000945	59.70	gold quality
kidney	UBERON:0002113	59.09	gold quality
urinary bladder	UBERON:0001255	59.01	silver quality
superior frontal gyrus	UBERON:0002661	58.43	gold quality
tonsil	UBERON:0002372	55.99	silver quality
prefrontal cortex	UBERON:0000451	55.65	gold quality
endometrium	UBERON:0001295	55.26	gold quality
islet of Langerhans	UBERON:0000006	54.73	gold quality
leukocyte	CL:0000738	54.31	silver quality
blood	UBERON:0000178	54.01	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.97	gold quality
primary visual cortex	UBERON:0002436	53.95	gold quality
uterine cervix	UBERON:0000002	53.56	gold quality
monocyte	CL:0000576	53.45	gold quality
right hemisphere of cerebellum	UBERON:0014890	52.58	gold quality
calcaneal tendon	UBERON:0003701	52.27	gold quality
cortex of kidney	UBERON:0001225	52.18	silver quality
adult mammalian kidney	UBERON:0000082	51.95	gold quality
multicellular organism	UBERON:0000468	51.36	gold quality
adrenal gland	UBERON:0002369	50.94	gold quality
lung	UBERON:0002048	50.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.