LINC02027

Summary

LINC02027 (long intergenic non-protein coding RNA 2027, HGNC:52862) is a long non-coding RNA gene on chromosome 3p12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52862
Approved symbol	LINC02027
Name	long intergenic non-protein coding RNA 2027
Location	3p12.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	LOC728290
Ensembl gene	ENSG00000243694
Ensembl biotype	lncRNA
Entrez	728290
RNAcentral	URS00003CC813 — lncRNA, 596 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000482617, ENST00000653347, ENST00000662919, ENST00000666491, ENST00000666975, ENST00000687870, ENST00000689551, ENST00000690741, ENST00000691568, ENST00000693619, ENST00000701007, ENST00000701405, ENST00000846354, ENST00000846355, ENST00000846356, ENST00000846357, ENST00000846358, ENST00000846359, ENST00000846360, ENST00000846361, ENST00000846362, ENST00000846363, ENST00000846364, ENST00000846365, ENST00000846366, ENST00000846367

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000482617 — 3 exons

Exon	Start	End
ENSE00003878950	81095112	81096796
ENSE00003932162	81026861	81026961
ENSE00004274064	80993831	80993927

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 86.23.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1572 / max 66.5832, expressed in 16 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37400	0.1380	13
37399	0.0192	10

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	86.23	gold quality
right lobe of liver	UBERON:0001114	85.65	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.53	gold quality
adult mammalian kidney	UBERON:0000082	78.26	gold quality
bone marrow cell	CL:0002092	75.01	silver quality
kidney	UBERON:0002113	74.15	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.50	gold quality
cortex of kidney	UBERON:0001225	67.53	gold quality
muscle tissue	UBERON:0002385	63.23	gold quality
skeletal muscle tissue	UBERON:0001134	62.26	silver quality
duodenum	UBERON:0002114	60.53	gold quality
cortical plate	UBERON:0005343	60.25	silver quality
metanephros cortex	UBERON:0010533	60.02	gold quality
ganglionic eminence	UBERON:0004023	59.63	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.91	silver quality
placenta	UBERON:0001987	56.62	gold quality
blood	UBERON:0000178	55.26	gold quality
monocyte	CL:0000576	54.43	gold quality
multicellular organism	UBERON:0000468	52.46	gold quality
smooth muscle tissue	UBERON:0001135	51.64	gold quality
islet of Langerhans	UBERON:0000006	51.56	gold quality
adrenal tissue	UBERON:0018303	51.53	gold quality
prefrontal cortex	UBERON:0000451	49.73	gold quality
calcaneal tendon	UBERON:0003701	49.25	silver quality
anterior cingulate cortex	UBERON:0009835	48.30	gold quality
muscle of leg	UBERON:0001383	47.84	silver quality
left ovary	UBERON:0002119	47.45	gold quality
gall bladder	UBERON:0002110	47.22	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	47.13	gold quality
ovary	UBERON:0000992	47.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.07

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.