LINC02028

Summary

LINC02028 (long intergenic non-protein coding RNA 2028, HGNC:27718) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27718
Approved symbol	LINC02028
Name	long intergenic non-protein coding RNA 2028
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230102
Ensembl biotype	lncRNA
Entrez	285389
RNAcentral	URS00008BD87E — lncRNA, 433 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 140 — 138 lncRNA, 2 retained_intron

ENST00000420947, ENST00000432154, ENST00000443776, ENST00000449350, ENST00000458224, ENST00000593326, ENST00000593559, ENST00000597775, ENST00000597974, ENST00000598535, ENST00000599153, ENST00000599441, ENST00000599735, ENST00000601524, ENST00000601913, ENST00000609015, ENST00000609304, ENST00000609933, ENST00000610423, ENST00000620876, ENST00000622169, ENST00000625586, ENST00000625668, ENST00000625879, ENST00000626476, ENST00000627894, ENST00000627909, ENST00000629693, ENST00000629795, ENST00000630262, ENST00000630484, ENST00000653573, ENST00000654490, ENST00000654593, ENST00000656099, ENST00000656867, ENST00000657966, ENST00000658493, ENST00000659267, ENST00000660052, ENST00000660199, ENST00000660282, ENST00000660359, ENST00000661206, ENST00000662513, ENST00000663517, ENST00000665355, ENST00000665835, ENST00000666539, ENST00000666958, ENST00000667864, ENST00000668599, ENST00000668675, ENST00000668727, ENST00000669236, ENST00000669285, ENST00000670206, ENST00000753597, ENST00000753598, ENST00000753599, ENST00000753600, ENST00000753601, ENST00000753602, ENST00000753603, ENST00000753604, ENST00000753605, ENST00000753606, ENST00000753607, ENST00000753608, ENST00000753609, ENST00000753610, ENST00000753611, ENST00000753612, ENST00000753613, ENST00000753614, ENST00000753615, ENST00000753616, ENST00000753617, ENST00000753618, ENST00000753619, ENST00000753620, ENST00000753621, ENST00000753622, ENST00000753623, ENST00000753624, ENST00000753625, ENST00000753626, ENST00000753627, ENST00000753628, ENST00000753629, ENST00000753630, ENST00000753631, ENST00000753632, ENST00000753633, ENST00000753634, ENST00000753635, ENST00000753636, ENST00000753637, ENST00000753638, ENST00000753639, ENST00000753640, ENST00000753641, ENST00000753642, ENST00000753643, ENST00000753644, ENST00000753645, ENST00000753646, ENST00000753647, ENST00000753648, ENST00000753649, ENST00000753650, ENST00000753651, ENST00000753652, ENST00000753653, ENST00000753654, ENST00000753655, ENST00000753656, ENST00000753657, ENST00000753658, ENST00000753659, ENST00000753660, ENST00000753661, ENST00000753662, ENST00000753663, ENST00000753664, ENST00000753665, ENST00000753666, ENST00000753667, ENST00000753668, ENST00000753669, ENST00000753670, ENST00000753671, ENST00000753672, ENST00000753673, ENST00000753674, ENST00000753675, ENST00000753676, ENST00000753677, ENST00000753678, ENST00000753679

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420947 — 5 exons

Exon	Start	End
ENSE00001644385	194052360	194052442
ENSE00001666401	194029646	194029753
ENSE00001676957	194023107	194023207
ENSE00001750981	194015443	194015635
ENSE00001768883	194057637	194057679

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 82.08.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1210 / max 28.5764, expressed in 35 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
46182	0.0744	19
46184	0.0305	9
46183	0.0161	6

Top tissues by expression

252 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.08	gold quality
left testis	UBERON:0004533	80.04	gold quality
right testis	UBERON:0004534	78.18	gold quality
testis	UBERON:0000473	77.25	gold quality
sperm	CL:0000019	76.90	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.65	gold quality
pancreatic ductal cell	CL:0002079	74.68	silver quality
right lobe of liver	UBERON:0001114	74.49	gold quality
lower esophagus mucosa	UBERON:0035834	73.85	gold quality
cortical plate	UBERON:0005343	70.10	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.95	gold quality
cardiac muscle of right atrium	UBERON:0003379	69.56	gold quality
left ventricle myocardium	UBERON:0006566	69.34	gold quality
bone marrow cell	CL:0002092	68.05	silver quality
tibialis anterior	UBERON:0001385	67.79	silver quality
ileal mucosa	UBERON:0000331	67.28	silver quality
left lobe of thyroid gland	UBERON:0001120	67.28	gold quality
right lobe of thyroid gland	UBERON:0001119	66.58	gold quality
thyroid gland	UBERON:0002046	66.56	gold quality
colonic epithelium	UBERON:0000397	65.80	silver quality
liver	UBERON:0002107	65.57	gold quality
muscle of leg	UBERON:0001383	65.02	gold quality
sural nerve	UBERON:0015488	64.88	gold quality
ventricular zone	UBERON:0003053	64.32	gold quality
gastrocnemius	UBERON:0001388	63.89	gold quality
kidney epithelium	UBERON:0004819	63.56	gold quality
cerebellar vermis	UBERON:0004720	63.11	gold quality
prefrontal cortex	UBERON:0000451	62.60	gold quality
esophagus mucosa	UBERON:0002469	61.70	gold quality
ganglionic eminence	UBERON:0004023	61.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.