LINC02029

Summary

LINC02029 (long intergenic non-protein coding RNA 2029, HGNC:52863) is a long non-coding RNA gene on chromosome 3q25.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52863
Approved symbol	LINC02029
Name	long intergenic non-protein coding RNA 2029
Location	3q25.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241544
Ensembl biotype	lncRNA
Entrez	105374177
RNAcentral	URS0000A7725D — lncRNA, 1511 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 29 lncRNA

ENST00000469196, ENST00000653334, ENST00000654643, ENST00000657118, ENST00000657628, ENST00000658205, ENST00000659992, ENST00000660101, ENST00000660509, ENST00000661446, ENST00000662247, ENST00000662778, ENST00000665035, ENST00000668918, ENST00000782347, ENST00000782348, ENST00000782349, ENST00000782350, ENST00000782351, ENST00000782352, ENST00000782353, ENST00000782354, ENST00000782355, ENST00000782356, ENST00000782357, ENST00000782358, ENST00000782359, ENST00000782360, ENST00000782361

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000469196 — 3 exons

Exon	Start	End
ENSE00003876425	157087859	157088011
ENSE00003877813	157088287	157088536
ENSE00003887678	157081780	157082918

Expression profiles

Bgee: expression breadth ubiquitous, 136 present calls, max score 91.19.

FANTOM5 (CAGE): breadth broad, TPM avg 0.6749 / max 68.5220, expressed in 198 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
39445	0.6247	182
39446	0.0502	22

Top tissues by expression

225 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.19	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.09	silver quality
sural nerve	UBERON:0015488	73.39	gold quality
left testis	UBERON:0004533	70.69	gold quality
right testis	UBERON:0004534	69.33	gold quality
sperm	CL:0000019	68.27	silver quality
testis	UBERON:0000473	68.15	gold quality
cortical plate	UBERON:0005343	61.85	gold quality
ventricular zone	UBERON:0003053	61.26	gold quality
bone marrow cell	CL:0002092	60.83	silver quality
stromal cell of endometrium	CL:0002255	59.74	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.26	gold quality
adenohypophysis	UBERON:0002196	56.59	gold quality
islet of Langerhans	UBERON:0000006	55.91	gold quality
calcaneal tendon	UBERON:0003701	55.80	silver quality
endothelial cell	CL:0000115	55.46	gold quality
adult organism	UBERON:0007023	55.00	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	54.93	gold quality
right lobe of liver	UBERON:0001114	54.71	gold quality
right atrium auricular region	UBERON:0006631	54.60	gold quality
cardiac atrium	UBERON:0002081	54.21	gold quality
muscle of leg	UBERON:0001383	52.88	gold quality
pituitary gland	UBERON:0000007	52.73	gold quality
gastrocnemius	UBERON:0001388	52.59	gold quality
prefrontal cortex	UBERON:0000451	52.42	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.36	gold quality
pancreas	UBERON:0001264	52.03	gold quality
corpus callosum	UBERON:0002336	51.60	gold quality
cerebellar vermis	UBERON:0004720	51.43	gold quality
spinal cord	UBERON:0002240	51.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.