LINC02039

Summary

LINC02039 (long intergenic non-protein coding RNA 2039, HGNC:52879) is a long non-coding RNA gene on chromosome 5q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52879
Approved symbol	LINC02039
Name	long intergenic non-protein coding RNA 2039
Location	5q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248107
Ensembl biotype	lncRNA
Entrez	102546228
RNAcentral	URS0000037193 — lncRNA, 566 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000507428, ENST00000667560, ENST00000781804, ENST00000781805, ENST00000781806, ENST00000781807, ENST00000781808, ENST00000781809, ENST00000781810, ENST00000781811

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507428 — 4 exons

Exon	Start	End
ENSE00002042102	126191144	126191218
ENSE00002063236	126193077	126193126
ENSE00004154191	126193600	126193852
ENSE00004154192	126179577	126179766

Expression profiles

Bgee: expression breadth broad, 45 present calls, max score 87.71.

Top tissues by expression

45 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.71	gold quality
left testis	UBERON:0004533	63.15	gold quality
testis	UBERON:0000473	63.02	gold quality
right testis	UBERON:0004534	59.91	gold quality
calcaneal tendon	UBERON:0003701	59.06	gold quality
myometrium	UBERON:0001296	59.04	gold quality
multicellular organism	UBERON:0000468	56.89	gold quality
liver	UBERON:0002107	53.91	gold quality
placenta	UBERON:0001987	51.78	gold quality
blood	UBERON:0000178	51.67	silver quality
gastrocnemius	UBERON:0001388	50.08	gold quality
body of pancreas	UBERON:0001150	48.56	gold quality
tibial nerve	UBERON:0001323	48.08	gold quality
right lobe of liver	UBERON:0001114	46.79	silver quality
heart	UBERON:0000948	46.25	gold quality
colon	UBERON:0001155	46.22	silver quality
left adrenal gland cortex	UBERON:0035825	44.98	silver quality
intestine	UBERON:0000160	44.94	silver quality
tibial artery	UBERON:0007610	44.60	silver quality
heart left ventricle	UBERON:0002084	44.11	silver quality
muscle layer of sigmoid colon	UBERON:0035805	43.18	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.72	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	42.72	silver quality
skin of leg	UBERON:0001511	42.12	gold quality
body of stomach	UBERON:0001161	41.88	silver quality
lung	UBERON:0002048	41.61	silver quality
right atrium auricular region	UBERON:0006631	41.28	silver quality
stomach	UBERON:0000945	40.35	silver quality
upper lobe of left lung	UBERON:0008952	39.61	silver quality
vagina	UBERON:0000996	39.40	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.