LINC02040

Summary

LINC02040 (long intergenic non-protein coding RNA 2040, HGNC:52880) is a long non-coding RNA gene on chromosome 3p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52880
Approved symbol	LINC02040
Name	long intergenic non-protein coding RNA 2040
Location	3p14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243149
Ensembl biotype	lncRNA
Entrez	102724763
RNAcentral	URS00026A246E — lncRNA, 820 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000481004, ENST00000657584, ENST00000667847, ENST00000759656

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000481004 — 4 exons

Exon	Start	End
ENSE00001836045	65193271	65193499
ENSE00001848618	65174958	65175076
ENSE00001940315	65189269	65189312
ENSE00001941964	65191404	65191567

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 72.88.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	72.88	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.55	gold quality
duodenum	UBERON:0002114	59.77	gold quality
bone marrow	UBERON:0002371	58.60	gold quality
monocyte	CL:0000576	56.67	gold quality
right lobe of liver	UBERON:0001114	54.48	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.40	gold quality
left adrenal gland cortex	UBERON:0035825	54.14	gold quality
stromal cell of endometrium	CL:0002255	53.94	silver quality
left testis	UBERON:0004533	53.51	gold quality
testis	UBERON:0000473	53.38	gold quality
liver	UBERON:0002107	53.15	gold quality
islet of Langerhans	UBERON:0000006	53.04	gold quality
blood	UBERON:0000178	52.87	gold quality
right adrenal gland cortex	UBERON:0035827	51.29	gold quality
right testis	UBERON:0004534	50.90	gold quality
prefrontal cortex	UBERON:0000451	50.77	gold quality
gall bladder	UBERON:0002110	50.11	gold quality
calcaneal tendon	UBERON:0003701	49.90	silver quality
endometrium	UBERON:0001295	49.57	silver quality
muscle of leg	UBERON:0001383	48.23	gold quality
adrenal gland	UBERON:0002369	47.38	gold quality
left coronary artery	UBERON:0001626	46.88	gold quality
gastrocnemius	UBERON:0001388	46.81	silver quality
tibial artery	UBERON:0007610	46.62	gold quality
popliteal artery	UBERON:0002250	46.58	gold quality
upper lobe of left lung	UBERON:0008952	46.58	gold quality
lung	UBERON:0002048	46.25	gold quality
primary visual cortex	UBERON:0002436	46.19	silver quality
right atrium auricular region	UBERON:0006631	46.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.