LINC02041

Summary

LINC02041 (long intergenic non-protein coding RNA 2041, HGNC:52881) is a long non-coding RNA gene on chromosome 3q27.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52881
Approved symbol	LINC02041
Name	long intergenic non-protein coding RNA 2041
Location	3q27.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-567G11.1
Ensembl gene	ENSG00000228952
Ensembl biotype	lncRNA
Entrez	105374261
RNAcentral	URS0000BC4492 — lncRNA, 983 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000440726

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440726 — 2 exons

Exon	Start	End
ENSE00001709446	187449251	187449450
ENSE00001739608	187448845	187448890

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 93.08.

Top tissues by expression

95 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.08	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.00	gold quality
gall bladder	UBERON:0002110	77.16	gold quality
mucosa of transverse colon	UBERON:0004991	75.51	gold quality
body of stomach	UBERON:0001161	74.55	gold quality
stomach	UBERON:0000945	73.14	gold quality
monocyte	CL:0000576	72.95	gold quality
duodenum	UBERON:0002114	71.27	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.86	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	65.69	gold quality
cortex of kidney	UBERON:0001225	65.54	gold quality
islet of Langerhans	UBERON:0000006	65.45	gold quality
placenta	UBERON:0001987	64.66	gold quality
fundus of stomach	UBERON:0001160	63.26	gold quality
omental fat pad	UBERON:0010414	63.16	gold quality
prefrontal cortex	UBERON:0000451	62.02	gold quality
kidney	UBERON:0002113	60.96	gold quality
liver	UBERON:0002107	60.84	gold quality
blood	UBERON:0000178	60.73	gold quality
colon	UBERON:0001155	60.60	gold quality
intestine	UBERON:0000160	60.41	gold quality
transverse colon	UBERON:0001157	60.01	gold quality
small intestine	UBERON:0002108	59.65	gold quality
adult mammalian kidney	UBERON:0000082	59.41	gold quality
right lobe of liver	UBERON:0001114	58.89	gold quality
body of pancreas	UBERON:0001150	58.81	gold quality
metanephros cortex	UBERON:0010533	58.14	gold quality
lung	UBERON:0002048	58.09	gold quality
endometrium	UBERON:0001295	58.05	gold quality
small intestine Peyer’s patch	UBERON:0003454	58.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.