LINC02042

Summary

LINC02042 (long intergenic non-protein coding RNA 2042, HGNC:52882) is a long non-coding RNA gene on chromosome 3q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52882
Approved symbol	LINC02042
Name	long intergenic non-protein coding RNA 2042
Location	3q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000240893
Ensembl biotype	lncRNA
Entrez	101929694
RNAcentral	URS000075B2BB — lncRNA, 2035 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000481624, ENST00000840254

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000481624 — 5 exons

Exon	Start	End
ENSE00001870912	112741699	112741915
ENSE00001902492	112738678	112738825
ENSE00001917784	112736447	112736696
ENSE00001931087	112749231	112749319
ENSE00001953052	112739694	112741011

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 74.73.

Top tissues by expression

211 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.73	gold quality
ventricular zone	UBERON:0003053	57.68	silver quality
ganglionic eminence	UBERON:0004023	56.89	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	54.57	gold quality
monocyte	CL:0000576	54.47	gold quality
granulocyte	CL:0000094	54.34	gold quality
blood	UBERON:0000178	50.33	silver quality
lower lobe of lung	UBERON:0008949	50.28	gold quality
smooth muscle tissue	UBERON:0001135	49.34	gold quality
mucosa of stomach	UBERON:0001199	49.21	gold quality
right lung	UBERON:0002167	49.13	gold quality
vermiform appendix	UBERON:0001154	48.91	gold quality
gall bladder	UBERON:0002110	48.87	gold quality
skin of hip	UBERON:0001554	48.84	silver quality
bone marrow	UBERON:0002371	48.76	gold quality
islet of Langerhans	UBERON:0000006	48.32	gold quality
upper leg skin	UBERON:0004262	48.27	silver quality
skin of leg	UBERON:0001511	48.09	gold quality
right ovary	UBERON:0002118	47.97	gold quality
right coronary artery	UBERON:0001625	47.93	gold quality
left ovary	UBERON:0002119	47.86	gold quality
lymph node	UBERON:0000029	47.70	silver quality
muscle of leg	UBERON:0001383	47.65	silver quality
subcutaneous adipose tissue	UBERON:0002190	47.46	gold quality
popliteal artery	UBERON:0002250	47.08	gold quality
tibial artery	UBERON:0007610	47.08	silver quality
endocervix	UBERON:0000458	46.87	gold quality
tibial nerve	UBERON:0001323	46.86	gold quality
pancreas	UBERON:0001264	46.81	silver quality
ovary	UBERON:0000992	46.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.