LINC02044

Summary

LINC02044 (long intergenic non-protein coding RNA 2044, HGNC:52884) is a long non-coding RNA gene on chromosome 3q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52884
Approved symbol	LINC02044
Name	long intergenic non-protein coding RNA 2044
Location	3q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243795
Ensembl biotype	lncRNA
Entrez	101929717
RNAcentral	URS000075D412 — lncRNA, 2414 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000490139, ENST00000784662

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000490139 — 4 exons

Exon	Start	End
ENSE00001823459	113142350	113144335
ENSE00001846027	113153272	113153488
ENSE00001905430	113165127	113165206
ENSE00001947716	113167601	113167819

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 63.18.

Top tissues by expression

204 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	63.18	gold quality
buccal mucosa cell	CL:0002336	62.71	gold quality
cortical plate	UBERON:0005343	62.15	gold quality
ganglionic eminence	UBERON:0004023	61.37	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.94	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	56.79	gold quality
prefrontal cortex	UBERON:0000451	55.96	gold quality
spinal cord	UBERON:0002240	55.27	gold quality
stromal cell of endometrium	CL:0002255	53.80	silver quality
hypothalamus	UBERON:0001898	53.45	gold quality
amygdala	UBERON:0001876	53.17	gold quality
endothelial cell	CL:0000115	52.86	gold quality
calcaneal tendon	UBERON:0003701	52.73	silver quality
anterior cingulate cortex	UBERON:0009835	52.09	gold quality
substantia nigra	UBERON:0002038	51.98	gold quality
granulocyte	CL:0000094	51.97	gold quality
nucleus accumbens	UBERON:0001882	51.82	gold quality
right hemisphere of cerebellum	UBERON:0014890	51.76	gold quality
cerebellar cortex	UBERON:0002129	51.47	gold quality
cerebellar hemisphere	UBERON:0002245	51.44	gold quality
neocortex	UBERON:0001950	51.19	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.17	gold quality
putamen	UBERON:0001874	51.02	gold quality
frontal cortex	UBERON:0001870	50.88	gold quality
cerebellum	UBERON:0002037	50.64	gold quality
midbrain	UBERON:0001891	50.51	gold quality
caudate nucleus	UBERON:0001873	50.24	gold quality
right frontal lobe	UBERON:0002810	49.94	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.90	gold quality
muscle of leg	UBERON:0001383	49.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.