LINC02045

Summary

LINC02045 (long intergenic non-protein coding RNA 2045, HGNC:52885) is a long non-coding RNA gene on chromosome 3q24.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52885
Approved symbol	LINC02045
Name	long intergenic non-protein coding RNA 2045
Location	3q24
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243347
Ensembl biotype	lncRNA
Entrez	105374146
RNAcentral	URS0000EF30E1 — lncRNA, 1014 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000460324, ENST00000662134, ENST00000733390, ENST00000733391, ENST00000733392, ENST00000733393, ENST00000733394, ENST00000733395, ENST00000733396, ENST00000733397, ENST00000733398, ENST00000733399, ENST00000733400, ENST00000733401, ENST00000733402, ENST00000733403

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000460324 — 4 exons

Exon	Start	End
ENSE00001812545	148210025	148210088
ENSE00001932847	148220510	148220612
ENSE00004064675	148279782	148280086
ENSE00004064682	148207576	148207934

Expression profiles

Bgee: expression breadth broad, 33 present calls, max score 88.93.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0185 / max 4.4721, expressed in 8 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
44983	0.0185	8

Top tissues by expression

33 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.93	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.05	gold quality
monocyte	CL:0000576	64.73	gold quality
blood	UBERON:0000178	50.23	gold quality
testis	UBERON:0000473	49.35	gold quality
left testis	UBERON:0004533	48.47	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.41	gold quality
right testis	UBERON:0004534	48.28	gold quality
multicellular organism	UBERON:0000468	48.07	gold quality
esophagus mucosa	UBERON:0002469	46.88	silver quality
adrenal tissue	UBERON:0018303	46.50	silver quality
islet of Langerhans	UBERON:0000006	46.25	silver quality
gastrocnemius	UBERON:0001388	45.96	silver quality
right lobe of liver	UBERON:0001114	45.33	silver quality
right atrium auricular region	UBERON:0006631	44.11	silver quality
subcutaneous adipose tissue	UBERON:0002190	43.40	silver quality
hypothalamus	UBERON:0001898	42.85	gold quality
cerebellar hemisphere	UBERON:0002245	42.49	silver quality
heart left ventricle	UBERON:0002084	41.92	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.48	silver quality
amygdala	UBERON:0001876	41.08	silver quality
left adrenal gland cortex	UBERON:0035825	40.21	silver quality
body of pancreas	UBERON:0001150	39.99	silver quality
muscle layer of sigmoid colon	UBERON:0035805	39.86	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	39.72	silver quality
skin of leg	UBERON:0001511	39.39	silver quality
tibial artery	UBERON:0007610	39.27	silver quality
left adrenal gland	UBERON:0001234	38.82	silver quality
Ammon’s horn	UBERON:0001954	38.75	silver quality
spleen	UBERON:0002106	38.26	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.