LINC02046

Summary

LINC02046 (long intergenic non-protein coding RNA 2046, HGNC:52886) is a long non-coding RNA gene on chromosome 3q24.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52886
Approved symbol	LINC02046
Name	long intergenic non-protein coding RNA 2046
Location	3q24
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242440
Ensembl biotype	lncRNA
Entrez	105374149
RNAcentral	URS0000BC4617 — lncRNA, 776 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000469812, ENST00000481334, ENST00000654242, ENST00000655240, ENST00000655836, ENST00000655891, ENST00000658698, ENST00000661886, ENST00000663786, ENST00000664156, ENST00000665545, ENST00000668285, ENST00000671193, ENST00000752835, ENST00000752836

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000469812 — 4 exons

Exon	Start	End
ENSE00001858851	148312111	148312252
ENSE00001935260	148288935	148289043
ENSE00001957446	148280895	148281109
ENSE00003869271	148343059	148343195

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 85.50.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.50	gold quality
sural nerve	UBERON:0015488	80.44	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.69	gold quality
bone marrow cell	CL:0002092	68.66	silver quality
adrenal tissue	UBERON:0018303	67.07	gold quality
ventricular zone	UBERON:0003053	66.25	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.88	gold quality
cortical plate	UBERON:0005343	62.16	gold quality
ganglionic eminence	UBERON:0004023	61.81	gold quality
testis	UBERON:0000473	60.03	gold quality
right testis	UBERON:0004534	59.07	gold quality
left testis	UBERON:0004533	58.51	gold quality
skeletal muscle tissue	UBERON:0001134	57.09	gold quality
bone marrow	UBERON:0002371	56.29	silver quality
monocyte	CL:0000576	54.39	gold quality
kidney	UBERON:0002113	53.56	gold quality
blood	UBERON:0000178	52.66	gold quality
liver	UBERON:0002107	51.89	gold quality
mucosa of transverse colon	UBERON:0004991	51.86	gold quality
adult mammalian kidney	UBERON:0000082	51.40	gold quality
islet of Langerhans	UBERON:0000006	50.04	gold quality
calcaneal tendon	UBERON:0003701	49.88	silver quality
lymph node	UBERON:0000029	49.76	silver quality
superior frontal gyrus	UBERON:0002661	49.70	gold quality
prefrontal cortex	UBERON:0000451	49.53	silver quality
muscle of leg	UBERON:0001383	49.09	gold quality
adrenal gland	UBERON:0002369	48.84	gold quality
placenta	UBERON:0001987	48.83	gold quality
gall bladder	UBERON:0002110	48.64	gold quality
gastrocnemius	UBERON:0001388	48.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.92

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.