LINC02047

Summary

LINC02047 (long intergenic non-protein coding RNA 2047, HGNC:52887) is a long non-coding RNA gene on chromosome 3p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52887
Approved symbol	LINC02047
Name	long intergenic non-protein coding RNA 2047
Location	3p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239454
Ensembl biotype	lncRNA
Entrez	101927346
RNAcentral	URS00001799D1 — lncRNA, 1371 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000494761

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000494761 — 2 exons

Exon	Start	End
ENSE00001865744	74004328	74005609
ENSE00001935292	73999805	73999893

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 63.01.

Top tissues by expression

170 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	63.01	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.68	gold quality
blood	UBERON:0000178	52.94	gold quality
leukocyte	CL:0000738	51.74	silver quality
monocyte	CL:0000576	50.91	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.68	gold quality
prefrontal cortex	UBERON:0000451	47.91	silver quality
muscle of leg	UBERON:0001383	47.71	silver quality
gastrocnemius	UBERON:0001388	47.67	silver quality
islet of Langerhans	UBERON:0000006	46.93	silver quality
corpus callosum	UBERON:0002336	46.29	silver quality
vermiform appendix	UBERON:0001154	46.22	silver quality
adrenal tissue	UBERON:0018303	46.19	silver quality
skin of hip	UBERON:0001554	45.87	silver quality
right lobe of liver	UBERON:0001114	45.44	silver quality
nasal cavity mucosa	UBERON:0001826	44.35	silver quality
spleen	UBERON:0002106	44.16	silver quality
Brodmann (1909) area 9	UBERON:0013540	43.71	silver quality
lymph node	UBERON:0000029	43.52	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	43.26	gold quality
lower esophagus	UBERON:0013473	43.06	silver quality
anatomical system	UBERON:0000467	42.86	gold quality
adult mammalian kidney	UBERON:0000082	42.78	gold quality
multicellular organism	UBERON:0000468	42.70	gold quality
material anatomical entity	UBERON:0000465	42.69	gold quality
lower lobe of lung	UBERON:0008949	42.68	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
epithelium of nasopharynx	UBERON:0001951	42.48	gold quality
descending thoracic aorta	UBERON:0002345	42.47	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.