LINC02048

Summary

LINC02048 (long intergenic non-protein coding RNA 2048, HGNC:52888) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52888
Approved symbol	LINC02048
Name	long intergenic non-protein coding RNA 2048
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228271
Ensembl biotype	lncRNA
Entrez	105374289
RNAcentral	URS00026A2545 — lncRNA, 1013 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000440556, ENST00000653696, ENST00000794836, ENST00000794837, ENST00000794838

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440556 — 3 exons

Exon	Start	End
ENSE00001624642	194285969	194287368
ENSE00001641851	194276682	194276820
ENSE00001668726	194276926	194277157

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 73.90.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left adrenal gland cortex	UBERON:0035825	73.90	gold quality
right adrenal gland	UBERON:0001233	73.60	gold quality
right adrenal gland cortex	UBERON:0035827	73.11	gold quality
left adrenal gland	UBERON:0001234	72.82	gold quality
adrenal gland	UBERON:0002369	72.39	gold quality
ventricular zone	UBERON:0003053	57.79	silver quality
liver	UBERON:0002107	55.28	gold quality
right lobe of liver	UBERON:0001114	54.36	gold quality
adenohypophysis	UBERON:0002196	54.02	gold quality
hypothalamus	UBERON:0001898	53.95	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.89	silver quality
pituitary gland	UBERON:0000007	52.67	gold quality
cortex of kidney	UBERON:0001225	51.44	gold quality
nucleus accumbens	UBERON:0001882	50.98	gold quality
kidney	UBERON:0002113	50.95	gold quality
endometrium	UBERON:0001295	50.62	silver quality
adult mammalian kidney	UBERON:0000082	50.39	gold quality
prefrontal cortex	UBERON:0000451	50.34	silver quality
monocyte	CL:0000576	49.16	silver quality
blood	UBERON:0000178	48.95	silver quality
lower esophagus mucosa	UBERON:0035834	48.94	gold quality
duodenum	UBERON:0002114	48.71	gold quality
islet of Langerhans	UBERON:0000006	48.42	gold quality
gall bladder	UBERON:0002110	47.42	gold quality
placenta	UBERON:0001987	47.16	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.16	silver quality
muscle of leg	UBERON:0001383	46.75	silver quality
vermiform appendix	UBERON:0001154	46.66	silver quality
gastrocnemius	UBERON:0001388	46.32	silver quality
right atrium auricular region	UBERON:0006631	45.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.