LINC02049

Summary

LINC02049 (long intergenic non-protein coding RNA 2049, HGNC:52889) is a long non-coding RNA gene on chromosome 3q13.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52889
Approved symbol	LINC02049
Name	long intergenic non-protein coding RNA 2049
Location	3q13.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243593
Ensembl biotype	lncRNA
Entrez	101926983
RNAcentral	URS0000A777D3 — lncRNA, 770 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000490647, ENST00000655299, ENST00000661060, ENST00000664712, ENST00000668252, ENST00000720436, ENST00000720437, ENST00000720438, ENST00000720439, ENST00000720440, ENST00000720441, ENST00000720442, ENST00000720443, ENST00000720444, ENST00000720445, ENST00000720446, ENST00000720447, ENST00000720448, ENST00000720449, ENST00000720450, ENST00000720451, ENST00000720452, ENST00000720453

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000490647 — 2 exons

Exon	Start	End
ENSE00001819518	120833440	120834094
ENSE00001923330	120836269	120836360

Expression profiles

Bgee: expression breadth broad, 20 present calls, max score 51.64.

Top tissues by expression

20 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	51.64	silver quality
prefrontal cortex	UBERON:0000451	51.16	gold quality
right lobe of liver	UBERON:0001114	48.94	silver quality
blood	UBERON:0000178	46.75	silver quality
gastrocnemius	UBERON:0001388	46.53	gold quality
left lobe of thyroid gland	UBERON:0001120	46.27	gold quality
adrenal tissue	UBERON:0018303	44.21	silver quality
anterior cingulate cortex	UBERON:0009835	41.68	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.61	silver quality
multicellular organism	UBERON:0000468	41.45	gold quality
tibial artery	UBERON:0007610	41.12	gold quality
putamen	UBERON:0001874	40.18	silver quality
testis	UBERON:0000473	40.03	gold quality
left testis	UBERON:0004533	39.69	gold quality
subcutaneous adipose tissue	UBERON:0002190	39.35	silver quality
right testis	UBERON:0004534	39.29	gold quality
Ammon’s horn	UBERON:0001954	39.23	silver quality
tibial nerve	UBERON:0001323	39.08	gold quality
left adrenal gland cortex	UBERON:0035825	38.12	silver quality
esophagus mucosa	UBERON:0002469	36.69	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.