LINC02050

Summary

LINC02050 (long intergenic non-protein coding RNA 2050, HGNC:52890) is a long non-coding RNA gene on chromosome 3p12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52890
Approved symbol	LINC02050
Name	long intergenic non-protein coding RNA 2050
Location	3p12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242781
Ensembl biotype	lncRNA
Entrez	105377175
RNAcentral	URS0002A4E1F4 — lncRNA, 1221 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000473938, ENST00000654830, ENST00000654848, ENST00000658456, ENST00000667434, ENST00000811634, ENST00000811635

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000473938 — 5 exons

Exon	Start	End
ENSE00001820623	80788797	80788969
ENSE00001833414	80789237	80789354
ENSE00001872055	80784041	80784117
ENSE00001921534	80780093	80780245
ENSE00001954698	80764897	80765087

Expression profiles

Bgee: expression breadth broad, 92 present calls, max score 90.57.

Top tissues by expression

92 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.57	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.41	gold quality
testis	UBERON:0000473	68.60	gold quality
right testis	UBERON:0004534	68.56	gold quality
left testis	UBERON:0004533	68.24	gold quality
placenta	UBERON:0001987	67.41	gold quality
sural nerve	UBERON:0015488	65.69	gold quality
bone marrow cell	CL:0002092	62.49	silver quality
calcaneal tendon	UBERON:0003701	57.43	gold quality
bone marrow	UBERON:0002371	56.87	silver quality
islet of Langerhans	UBERON:0000006	56.31	gold quality
liver	UBERON:0002107	54.96	gold quality
blood	UBERON:0000178	54.80	gold quality
lymph node	UBERON:0000029	52.86	gold quality
adrenal tissue	UBERON:0018303	52.70	gold quality
monocyte	CL:0000576	52.50	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.22	gold quality
prefrontal cortex	UBERON:0000451	52.10	gold quality
multicellular organism	UBERON:0000468	50.65	gold quality
right lobe of thyroid gland	UBERON:0001119	49.17	gold quality
cerebellar hemisphere	UBERON:0002245	48.80	silver quality
muscle of leg	UBERON:0001383	48.38	gold quality
tibial artery	UBERON:0007610	48.21	gold quality
smooth muscle tissue	UBERON:0001135	48.19	gold quality
gastrocnemius	UBERON:0001388	47.85	gold quality
adrenal gland	UBERON:0002369	47.10	gold quality
left adrenal gland cortex	UBERON:0035825	47.00	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.63	silver quality
spleen	UBERON:0002106	46.62	gold quality
lung	UBERON:0002048	46.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.