LINC02054

Summary

LINC02054 (long intergenic non-protein coding RNA 2054, HGNC:52894) is a long non-coding RNA gene on chromosome 3q27.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52894
Approved symbol	LINC02054
Name	long intergenic non-protein coding RNA 2054
Location	3q27.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224153
Ensembl biotype	lncRNA
Entrez	105374250
RNAcentral	URS0000E60B21 — lncRNA, 978 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000419960, ENST00000478780, ENST00000643190, ENST00000645656, ENST00000787879, ENST00000787880, ENST00000787881, ENST00000787882, ENST00000787883, ENST00000787884, ENST00000787885, ENST00000787886, ENST00000787887, ENST00000787888, ENST00000787889

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419960 — 3 exons

Exon	Start	End
ENSE00001621077	184426592	184427015
ENSE00004165900	184401552	184401685
ENSE00004165904	184439244	184439650

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 81.13.

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar hemisphere	UBERON:0002245	81.13	gold quality
cerebellar cortex	UBERON:0002129	81.08	gold quality
cerebellum	UBERON:0002037	80.99	gold quality
right hemisphere of cerebellum	UBERON:0014890	79.83	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.53	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.70	gold quality
cortical plate	UBERON:0005343	65.30	gold quality
primary visual cortex	UBERON:0002436	64.00	gold quality
right frontal lobe	UBERON:0002810	62.80	gold quality
left testis	UBERON:0004533	61.09	gold quality
testis	UBERON:0000473	61.08	gold quality
frontal cortex	UBERON:0001870	60.70	gold quality
superior frontal gyrus	UBERON:0002661	60.58	gold quality
ganglionic eminence	UBERON:0004023	60.37	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	59.75	gold quality
cerebral cortex	UBERON:0000956	59.15	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.11	gold quality
tonsil	UBERON:0002372	59.00	silver quality
prefrontal cortex	UBERON:0000451	58.99	gold quality
Brodmann (1909) area 9	UBERON:0013540	58.50	gold quality
right testis	UBERON:0004534	58.46	gold quality
anterior cingulate cortex	UBERON:0009835	58.33	gold quality
brain	UBERON:0000955	58.05	gold quality
Ammon’s horn	UBERON:0001954	54.88	gold quality
myometrium	UBERON:0001296	54.44	gold quality
temporal lobe	UBERON:0001871	54.40	gold quality
amygdala	UBERON:0001876	54.38	gold quality
liver	UBERON:0002107	53.61	gold quality
body of uterus	UBERON:0009853	52.81	gold quality
endometrium	UBERON:0001295	52.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.