LINC02055

Summary

LINC02055 (long intergenic non-protein coding RNA 2055, HGNC:52895) is a long non-coding RNA gene on chromosome 8q24.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52895
Approved symbol	LINC02055
Name	long intergenic non-protein coding RNA 2055
Location	8q24.23
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP1130-1
Ensembl gene	ENSG00000254101
Ensembl biotype	lncRNA
Entrez	107986980
RNAcentral	URS000033D6AF — lncRNA, 706 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 57 — 57 lncRNA

ENST00000502901, ENST00000517345, ENST00000520060, ENST00000520068, ENST00000521034, ENST00000521090, ENST00000521097, ENST00000523150, ENST00000523232, ENST00000524346, ENST00000648045, ENST00000648077, ENST00000649576, ENST00000650054, ENST00000650217, ENST00000650445, ENST00000650470, ENST00000650515, ENST00000653309, ENST00000654723, ENST00000655492, ENST00000658944, ENST00000659405, ENST00000660691, ENST00000662546, ENST00000663759, ENST00000663951, ENST00000664755, ENST00000666475, ENST00000667909, ENST00000669387, ENST00000671540, ENST00000685617, ENST00000738600, ENST00000747785, ENST00000753360, ENST00000753361, ENST00000753362, ENST00000753363, ENST00000753364, ENST00000753365, ENST00000753366, ENST00000753367, ENST00000753368, ENST00000753369, ENST00000753370, ENST00000753371, ENST00000799476, ENST00000836256, ENST00000837562, ENST00000837563, ENST00000837564, ENST00000837565, ENST00000837566, ENST00000837567, ENST00000837568, ENST00000837569

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502901 — 4 exons

Exon	Start	End
ENSE00002103720	136165934	136166122
ENSE00002105711	136165222	136165343
ENSE00002131038	136047021	136047205
ENSE00002137780	136162475	136162533

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 82.64.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3746 / max 152.7841, expressed in 55 samples.

FANTOM5 promoters (6 alternative TSS)

Promoter ID	TPM avg	Samples expressed
91253	0.1517	35
91252	0.0706	18
91251	0.0579	13
91250	0.0483	7
91247	0.0235	14
91249	0.0226	6

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.64	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.32	gold quality
corpus callosum	UBERON:0002336	75.54	gold quality
superior frontal gyrus	UBERON:0002661	74.24	gold quality
placenta	UBERON:0001987	72.80	gold quality
lower esophagus mucosa	UBERON:0035834	70.89	gold quality
ventricular zone	UBERON:0003053	70.38	gold quality
bone marrow cell	CL:0002092	70.29	silver quality
prefrontal cortex	UBERON:0000451	68.48	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	67.72	gold quality
testis	UBERON:0000473	67.60	gold quality
sural nerve	UBERON:0015488	67.19	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	66.67	gold quality
frontal cortex	UBERON:0001870	66.65	gold quality
anterior cingulate cortex	UBERON:0009835	66.62	gold quality
left testis	UBERON:0004533	66.60	gold quality
right testis	UBERON:0004534	66.41	gold quality
ganglionic eminence	UBERON:0004023	66.09	gold quality
cerebral cortex	UBERON:0000956	64.88	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.88	gold quality
cortical plate	UBERON:0005343	64.76	gold quality
right frontal lobe	UBERON:0002810	63.13	gold quality
monocyte	CL:0000576	62.94	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.97	gold quality
calcaneal tendon	UBERON:0003701	61.89	gold quality
primary visual cortex	UBERON:0002436	61.72	gold quality
bone marrow	UBERON:0002371	59.17	gold quality
brain	UBERON:0000955	57.28	gold quality
islet of Langerhans	UBERON:0000006	57.18	gold quality
liver	UBERON:0002107	56.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	7.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.