LINC02061

Summary

LINC02061 (long intergenic non-protein coding RNA 2061, HGNC:52906) is a long non-coding RNA gene on chromosome 5p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52906
Approved symbol	LINC02061
Name	long intergenic non-protein coding RNA 2061
Location	5p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250885
Ensembl biotype	lncRNA
Entrez	105374714
RNAcentral	URS00026A26EF — lncRNA, 1412 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000514225

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000514225 — 2 exons

Exon	Start	End
ENSE00002032229	32646564	32646865
ENSE00002083501	32651944	32651976

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 76.63.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0025 / max 3.2095, expressed in 1 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
61194	0.0025	1

Top tissues by expression

43 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney	UBERON:0002113	76.63	gold quality
adult mammalian kidney	UBERON:0000082	75.97	gold quality
cortex of kidney	UBERON:0001225	71.80	gold quality
monocyte	CL:0000576	65.86	gold quality
metanephros cortex	UBERON:0010533	62.63	gold quality
blood	UBERON:0000178	58.83	gold quality
heart	UBERON:0000948	57.64	gold quality
right atrium auricular region	UBERON:0006631	56.13	gold quality
prostate gland	UBERON:0002367	54.94	gold quality
intestine	UBERON:0000160	54.89	gold quality
colon	UBERON:0001155	53.76	gold quality
subcutaneous adipose tissue	UBERON:0002190	53.40	gold quality
endometrium	UBERON:0001295	53.11	gold quality
liver	UBERON:0002107	52.64	gold quality
stomach	UBERON:0000945	51.73	gold quality
vagina	UBERON:0000996	51.16	gold quality
esophagus mucosa	UBERON:0002469	50.68	gold quality
left coronary artery	UBERON:0001626	50.35	gold quality
tibial artery	UBERON:0007610	49.27	gold quality
body of pancreas	UBERON:0001150	49.13	gold quality
ascending aorta	UBERON:0001496	48.37	gold quality
lung	UBERON:0002048	47.79	gold quality
omental fat pad	UBERON:0010414	46.34	gold quality
zone of skin	UBERON:0000014	45.42	gold quality
lower esophagus muscularis layer	UBERON:0035833	45.14	gold quality
cerebral cortex	UBERON:0000956	45.13	gold quality
skin of leg	UBERON:0001511	45.11	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.06	gold quality
left ovary	UBERON:0002119	44.16	gold quality
upper lobe of left lung	UBERON:0008952	44.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.