LINC02064

Summary

LINC02064 (long intergenic non-protein coding RNA 2064, HGNC:52909) is a long non-coding RNA gene on chromosome 5p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52909
Approved symbol	LINC02064
Name	long intergenic non-protein coding RNA 2064
Location	5p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248391
Ensembl biotype	lncRNA
Entrez	101929681
RNAcentral	URS000075C5A3 — lncRNA, 691 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000506492, ENST00000507876, ENST00000653940, ENST00000654073, ENST00000654399, ENST00000655290, ENST00000655577, ENST00000656393, ENST00000657377, ENST00000658307, ENST00000658396, ENST00000658621, ENST00000659199, ENST00000659417, ENST00000660483, ENST00000662266, ENST00000664538, ENST00000664589, ENST00000666312, ENST00000667811, ENST00000668096, ENST00000668326, ENST00000668461, ENST00000669028, ENST00000669150, ENST00000669258, ENST00000669821, ENST00000671200, ENST00000825692, ENST00000825693, ENST00000825694, ENST00000825695, ENST00000825696, ENST00000825697, ENST00000825698, ENST00000825699, ENST00000825700, ENST00000825701, ENST00000825702

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506492 — 5 exons

Exon	Start	End
ENSE00002022065	29381853	29381962
ENSE00002043167	29380069	29380325
ENSE00002085244	29384320	29384392
ENSE00003881657	29389811	29389935
ENSE00003882550	29395854	29395989

Expression profiles

Bgee: expression breadth ubiquitous, 143 present calls, max score 93.74.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0067 / max 4.0598, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
203510	0.0067	4

Top tissues by expression

231 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	93.74	gold quality
pancreatic ductal cell	CL:0002079	88.25	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.49	gold quality
buccal mucosa cell	CL:0002336	84.91	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.73	gold quality
mucosa of paranasal sinus	UBERON:0005030	83.72	gold quality
superficial temporal artery	UBERON:0001614	82.17	gold quality
epithelial cell of pancreas	CL:0000083	81.97	silver quality
cardiac muscle of right atrium	UBERON:0003379	81.20	gold quality
left testis	UBERON:0004533	80.49	gold quality
sural nerve	UBERON:0015488	80.26	gold quality
right testis	UBERON:0004534	79.98	gold quality
left ventricle myocardium	UBERON:0006566	79.87	gold quality
tibialis anterior	UBERON:0001385	78.91	silver quality
testis	UBERON:0000473	78.49	gold quality
germinal epithelium of ovary	UBERON:0001304	78.48	gold quality
ileal mucosa	UBERON:0000331	77.43	silver quality
kidney epithelium	UBERON:0004819	76.98	gold quality
myocardium	UBERON:0002349	73.44	gold quality
nasal cavity epithelium	UBERON:0005384	73.43	gold quality
visceral pleura	UBERON:0002401	73.41	gold quality
parietal pleura	UBERON:0002400	72.86	gold quality
upper arm skin	UBERON:0004263	72.60	gold quality
quadriceps femoris	UBERON:0001377	72.33	gold quality
deltoid	UBERON:0001476	72.11	silver quality
gingival epithelium	UBERON:0001949	71.42	gold quality
cerebellar vermis	UBERON:0004720	71.24	gold quality
vastus lateralis	UBERON:0001379	70.95	gold quality
calcaneal tendon	UBERON:0003701	69.34	gold quality
biceps brachii	UBERON:0001507	69.32	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.