LINC02070

Summary

LINC02070 (long intergenic non-protein coding RNA 2070, HGNC:52916) is a long non-coding RNA gene on chromosome 3p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52916
Approved symbol	LINC02070
Name	long intergenic non-protein coding RNA 2070
Location	3p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241328
Ensembl biotype	lncRNA
Entrez	101927494
RNAcentral	URS0000A76F81 — lncRNA, 1345 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000460586

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000460586 — 2 exons

Exon	Start	End
ENSE00001851017	86495791	86496996
ENSE00001927600	86481943	86482057

Expression profiles

Bgee: expression breadth broad, 21 present calls, max score 85.02.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0117 / max 7.5706, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
202829	0.0117	3

Top tissues by expression

170 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.02	gold quality
muscle of leg	UBERON:0001383	54.97	silver quality
upper lobe of lung	UBERON:0008948	53.67	silver quality
lower lobe of lung	UBERON:0008949	53.31	silver quality
monocyte	CL:0000576	51.74	silver quality
Ammon’s horn	UBERON:0001954	50.81	gold quality
cerebellar cortex	UBERON:0002129	48.21	gold quality
cerebellar hemisphere	UBERON:0002245	48.16	gold quality
right hemisphere of cerebellum	UBERON:0014890	46.55	gold quality
anterior cingulate cortex	UBERON:0009835	46.26	silver quality
cerebellum	UBERON:0002037	45.57	gold quality
prefrontal cortex	UBERON:0000451	44.65	gold quality
cerebral cortex	UBERON:0000956	44.28	gold quality
lung	UBERON:0002048	44.22	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
forebrain	UBERON:0001890	42.84	gold quality
brain	UBERON:0000955	42.78	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.11	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
vagina	UBERON:0000996	41.40	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
anatomical system	UBERON:0000467	41.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.