LINC02078

Summary

LINC02078 (long intergenic non-protein coding RNA 2078, HGNC:52926) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52926
Approved symbol	LINC02078
Name	long intergenic non-protein coding RNA 2078
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	HP09025
Ensembl gene	ENSG00000267719
Ensembl biotype	lncRNA
Entrez	100652929
RNAcentral	URS000075A6A2 — lncRNA, 4237 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000592718, ENST00000819691

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000592718 — 2 exons

Exon	Start	End
ENSE00002841914	79708472	79712317
ENSE00002922894	79707266	79707656

Expression profiles

Bgee: expression breadth broad, 56 present calls, max score 82.93.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0375 / max 36.3496, expressed in 5 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
163178	0.0375	5

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	82.93	silver quality
upper leg skin	UBERON:0004262	57.92	silver quality
gingival epithelium	UBERON:0001949	57.71	gold quality
ganglionic eminence	UBERON:0004023	55.80	silver quality
vena cava	UBERON:0004087	54.63	gold quality
sperm	CL:0000019	53.31	gold quality
gingiva	UBERON:0001828	52.71	gold quality
Brodmann (1909) area 46	UBERON:0006483	51.24	gold quality
monocyte	CL:0000576	50.93	silver quality
cerebellar cortex	UBERON:0002129	50.77	gold quality
cerebellar hemisphere	UBERON:0002245	50.65	gold quality
skin of hip	UBERON:0001554	50.35	silver quality
metanephros cortex	UBERON:0010533	50.27	gold quality
cerebellum	UBERON:0002037	50.16	gold quality
body of uterus	UBERON:0009853	50.12	gold quality
medial globus pallidus	UBERON:0002477	49.62	gold quality
right hemisphere of cerebellum	UBERON:0014890	49.52	gold quality
right lobe of liver	UBERON:0001114	49.01	silver quality
mouth mucosa	UBERON:0003729	48.10	gold quality
gall bladder	UBERON:0002110	48.02	silver quality
globus pallidus	UBERON:0001875	47.50	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.31	gold quality
amniotic fluid	UBERON:0000173	46.81	gold quality
cortex of kidney	UBERON:0001225	46.51	gold quality
tonsil	UBERON:0002372	46.30	gold quality
smooth muscle tissue	UBERON:0001135	45.52	gold quality
myometrium	UBERON:0001296	45.24	gold quality
muscle layer of sigmoid colon	UBERON:0035805	45.14	gold quality
adult mammalian kidney	UBERON:0000082	45.10	gold quality
metanephros	UBERON:0000081	44.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.57

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.