LINC02079

Summary

LINC02079 (long intergenic non-protein coding RNA 2079, HGNC:52927) is a long non-coding RNA gene on chromosome 17q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52927
Approved symbol	LINC02079
Name	long intergenic non-protein coding RNA 2079
Location	17q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266013
Ensembl biotype	lncRNA
Entrez	105371766
RNAcentral	URS0000A771B6 — lncRNA, 308 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000577621, ENST00000582518, ENST00000583161, ENST00000717160, ENST00000717161, ENST00000717162, ENST00000717163, ENST00000735518, ENST00000735519, ENST00000735520, ENST00000735521

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000577621 — 3 exons

Exon	Start	End
ENSE00002710814	39012933	39013029
ENSE00004068210	39008457	39009702
ENSE00004068216	39027550	39027931

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 96.63.

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.63	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.31	gold quality
ganglionic eminence	UBERON:0004023	74.59	gold quality
right testis	UBERON:0004534	74.54	gold quality
left testis	UBERON:0004533	74.43	gold quality
colonic epithelium	UBERON:0000397	74.42	gold quality
testis	UBERON:0000473	73.45	gold quality
hindlimb stylopod muscle	UBERON:0004252	72.30	gold quality
ventricular zone	UBERON:0003053	70.38	gold quality
stromal cell of endometrium	CL:0002255	68.15	gold quality
skeletal muscle tissue	UBERON:0001134	67.02	gold quality
prefrontal cortex	UBERON:0000451	66.31	gold quality
lymph node	UBERON:0000029	65.49	gold quality
leukocyte	CL:0000738	65.42	gold quality
islet of Langerhans	UBERON:0000006	64.80	gold quality
calcaneal tendon	UBERON:0003701	64.72	gold quality
monocyte	CL:0000576	63.66	gold quality
gall bladder	UBERON:0002110	63.56	gold quality
bone marrow	UBERON:0002371	63.53	gold quality
endometrium	UBERON:0001295	62.69	gold quality
corpus callosum	UBERON:0002336	62.57	gold quality
placenta	UBERON:0001987	62.30	gold quality
right coronary artery	UBERON:0001625	62.01	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.45	gold quality
duodenum	UBERON:0002114	61.26	gold quality
urinary bladder	UBERON:0001255	61.01	gold quality
muscle of leg	UBERON:0001383	60.93	gold quality
left adrenal gland cortex	UBERON:0035825	60.34	gold quality
primary visual cortex	UBERON:0002436	60.16	gold quality
gastrocnemius	UBERON:0001388	59.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.49

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.