LINC02080

Summary

LINC02080 (long intergenic non-protein coding RNA 2080, HGNC:52928) is a long non-coding RNA gene on chromosome 17q25.1-q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52928
Approved symbol	LINC02080
Name	long intergenic non-protein coding RNA 2080
Location	17q25.1-q25.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ30938, CTD-2246P4.1
Ensembl gene	ENSG00000267065
Ensembl biotype	lncRNA
Entrez	101928514
RNAcentral	URS000075AB8C — lncRNA, 3085 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000585863

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000585863 — 3 exons

Exon	Start	End
ENSE00002801287	76804185	76805953
ENSE00002908104	76799044	76799544
ENSE00003766553	76806288	76807102

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 63.21.

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	63.21	silver quality
cortical plate	UBERON:0005343	60.05	silver quality
hindlimb stylopod muscle	UBERON:0004252	57.29	silver quality
skeletal muscle tissue	UBERON:0001134	55.87	silver quality
muscle tissue	UBERON:0002385	53.50	silver quality
stromal cell of endometrium	CL:0002255	52.25	silver quality
monocyte	CL:0000576	50.56	silver quality
superior frontal gyrus	UBERON:0002661	50.03	gold quality
blood	UBERON:0000178	49.67	silver quality
primary visual cortex	UBERON:0002436	49.16	gold quality
prefrontal cortex	UBERON:0000451	49.01	silver quality
placenta	UBERON:0001987	48.63	gold quality
lymph node	UBERON:0000029	48.09	silver quality
muscle of leg	UBERON:0001383	48.02	silver quality
cerebellum	UBERON:0002037	46.77	silver quality
cerebellar cortex	UBERON:0002129	46.52	silver quality
cerebellar hemisphere	UBERON:0002245	46.18	silver quality
adult mammalian kidney	UBERON:0000082	46.03	silver quality
cortex of kidney	UBERON:0001225	46.00	silver quality
urinary bladder	UBERON:0001255	45.95	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.79	gold quality
islet of Langerhans	UBERON:0000006	44.38	silver quality
gastrocnemius	UBERON:0001388	44.26	silver quality
myometrium	UBERON:0001296	44.13	silver quality
frontal cortex	UBERON:0001870	43.73	silver quality
putamen	UBERON:0001874	43.63	gold quality
apex of heart	UBERON:0002098	43.57	silver quality
heart left ventricle	UBERON:0002084	43.45	silver quality
Brodmann (1909) area 9	UBERON:0013540	43.38	silver quality
body of pancreas	UBERON:0001150	42.65	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.