LINC02084

Summary

LINC02084 (long intergenic non-protein coding RNA 2084, HGNC:52934) is a long non-coding RNA gene on chromosome 3p24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52934
Approved symbol	LINC02084
Name	long intergenic non-protein coding RNA 2084
Location	3p24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272282
Ensembl biotype	lncRNA
Entrez	105377006
RNAcentral	URS0002A3AF74 — lncRNA, 2670 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000606069, ENST00000785157, ENST00000785158, ENST00000785159, ENST00000785160, ENST00000785161, ENST00000785162, ENST00000785163, ENST00000785164, ENST00000785165, ENST00000785166, ENST00000785167, ENST00000785168

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000606069 — 1 exons

Exon	Start	End
ENSE00004160712	27712545	27715214

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 87.25.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1299 / max 19.5415, expressed in 40 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
35776	0.1299	40

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
granulocyte	CL:0000094	87.25	gold quality
blood	UBERON:0000178	72.85	gold quality
spleen	UBERON:0002106	71.72	gold quality
lymph node	UBERON:0000029	70.77	gold quality
tonsil	UBERON:0002372	65.89	gold quality
bone marrow cell	CL:0002092	65.33	silver quality
ventricular zone	UBERON:0003053	62.80	gold quality
muscle tissue	UBERON:0002385	61.81	gold quality
gall bladder	UBERON:0002110	61.65	gold quality
ganglionic eminence	UBERON:0004023	60.88	gold quality
leukocyte	CL:0000738	60.09	gold quality
vermiform appendix	UBERON:0001154	59.97	gold quality
bone marrow	UBERON:0002371	59.27	gold quality
liver	UBERON:0002107	57.68	gold quality
right lobe of liver	UBERON:0001114	56.30	gold quality
monocyte	CL:0000576	55.80	gold quality
right lung	UBERON:0002167	55.22	gold quality
stromal cell of endometrium	CL:0002255	54.85	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.63	silver quality
smooth muscle tissue	UBERON:0001135	54.18	gold quality
cerebellum	UBERON:0002037	53.73	gold quality
cerebellar cortex	UBERON:0002129	53.71	gold quality
cerebellar hemisphere	UBERON:0002245	53.63	gold quality
right hemisphere of cerebellum	UBERON:0014890	53.23	gold quality
small intestine	UBERON:0002108	53.15	gold quality
duodenum	UBERON:0002114	52.97	gold quality
lung	UBERON:0002048	52.82	gold quality
urinary bladder	UBERON:0001255	52.77	gold quality
left adrenal gland cortex	UBERON:0035825	52.75	gold quality
adrenal gland	UBERON:0002369	52.66	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.91

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.