LINC02088

Summary

LINC02088 (long intergenic non-protein coding RNA 2088, HGNC:52939) is a long non-coding RNA gene on chromosome 17p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52939
Approved symbol	LINC02088
Name	long intergenic non-protein coding RNA 2088
Location	17p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227685
Ensembl biotype	lncRNA
Entrez	105371582
RNAcentral	URS0000BC4466 — lncRNA, 571 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000428134, ENST00000773318, ENST00000773319

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000428134 — 4 exons

Exon	Start	End
ENSE00001678517	20614488	20614668
ENSE00002396756	20631472	20631549
ENSE00004138188	20633037	20633272
ENSE00004138190	20612461	20613074

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 82.70.

Top tissues by expression

68 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.70	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.60	gold quality
ventricular zone	UBERON:0003053	63.82	gold quality
lymph node	UBERON:0000029	62.61	gold quality
ganglionic eminence	UBERON:0004023	62.39	gold quality
cortical plate	UBERON:0005343	60.46	gold quality
skeletal muscle tissue	UBERON:0001134	57.06	gold quality
myometrium	UBERON:0001296	54.85	gold quality
prefrontal cortex	UBERON:0000451	53.06	gold quality
blood	UBERON:0000178	52.24	gold quality
granulocyte	CL:0000094	48.18	silver quality
adult mammalian kidney	UBERON:0000082	47.28	gold quality
cerebellum	UBERON:0002037	45.49	silver quality
gastrocnemius	UBERON:0001388	44.79	silver quality
liver	UBERON:0002107	44.66	silver quality
upper lobe of left lung	UBERON:0008952	44.44	gold quality
cerebellar cortex	UBERON:0002129	44.18	silver quality
tibial artery	UBERON:0007610	43.22	silver quality
right hemisphere of cerebellum	UBERON:0014890	43.19	silver quality
cerebellar hemisphere	UBERON:0002245	42.98	silver quality
right lobe of liver	UBERON:0001114	42.95	silver quality
heart left ventricle	UBERON:0002084	42.93	gold quality
multicellular organism	UBERON:0000468	42.68	gold quality
lung	UBERON:0002048	42.57	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	42.31	silver quality
heart	UBERON:0000948	42.23	gold quality
right adrenal gland cortex	UBERON:0035827	42.03	silver quality
lower esophagus muscularis layer	UBERON:0035833	41.84	silver quality
amygdala	UBERON:0001876	41.31	silver quality
body of pancreas	UBERON:0001150	41.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.