LINC02090

Summary

LINC02090 (long intergenic non-protein coding RNA 2090, HGNC:52941) is a long non-coding RNA gene on chromosome 17p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52941
Approved symbol	LINC02090
Name	long intergenic non-protein coding RNA 2090
Location	17p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230969
Ensembl biotype	lncRNA
Entrez	105371562
RNAcentral	URS0000BC44AB — lncRNA, 399 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000419151, ENST00000841732, ENST00000841733, ENST00000841734, ENST00000841735, ENST00000841736, ENST00000841737, ENST00000841738

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419151 — 3 exons

Exon	Start	End
ENSE00001618613	16988915	16989050
ENSE00001688894	16990109	16990177
ENSE00001704343	16988329	16988523

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 75.10.

Top tissues by expression

62 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	75.10	gold quality
lymph node	UBERON:0000029	63.96	gold quality
vermiform appendix	UBERON:0001154	62.20	gold quality
duodenum	UBERON:0002114	57.70	gold quality
placenta	UBERON:0001987	57.59	gold quality
spleen	UBERON:0002106	54.86	gold quality
blood	UBERON:0000178	54.46	gold quality
tonsil	UBERON:0002372	53.96	gold quality
monocyte	CL:0000576	51.43	silver quality
granulocyte	CL:0000094	50.05	silver quality
liver	UBERON:0002107	49.17	silver quality
skin of leg	UBERON:0001511	48.24	gold quality
right lobe of liver	UBERON:0001114	47.48	silver quality
body of stomach	UBERON:0001161	45.67	gold quality
body of pancreas	UBERON:0001150	45.64	silver quality
anterior cingulate cortex	UBERON:0009835	45.58	gold quality
ascending aorta	UBERON:0001496	45.36	gold quality
colon	UBERON:0001155	45.26	gold quality
rectum	UBERON:0001052	45.14	gold quality
transverse colon	UBERON:0001157	45.03	gold quality
heart left ventricle	UBERON:0002084	45.02	gold quality
esophagus mucosa	UBERON:0002469	45.00	gold quality
tibial artery	UBERON:0007610	44.70	gold quality
thoracic mammary gland	UBERON:0005200	44.16	gold quality
saliva-secreting gland	UBERON:0001044	44.00	gold quality
mucosa of transverse colon	UBERON:0004991	43.98	silver quality
left lobe of thyroid gland	UBERON:0001120	43.96	gold quality
adrenal gland	UBERON:0002369	43.76	silver quality
thyroid gland	UBERON:0002046	43.73	gold quality
Brodmann (1909) area 9	UBERON:0013540	43.73	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.99

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.