LINC02091

Summary

LINC02091 (long intergenic non-protein coding RNA 2091, HGNC:52942) is a long non-coding RNA gene on chromosome 17p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52942
Approved symbol	LINC02091
Name	long intergenic non-protein coding RNA 2091
Location	17p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273172
Ensembl biotype	lncRNA
Entrez	100506371
RNAcentral	URS000075DA1C — lncRNA, 791 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000576171, ENST00000792641, ENST00000792642, ENST00000792643, ENST00000792644, ENST00000792645, ENST00000792646, ENST00000792647, ENST00000792648

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000576171 — 3 exons

Exon	Start	End
ENSE00002638219	187096	187257
ENSE00002642806	191200	191587
ENSE00003523242	183824	184458

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 85.88.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0119 / max 8.4490, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
163595	0.0119	4

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.88	gold quality
right testis	UBERON:0004534	67.64	gold quality
testis	UBERON:0000473	66.04	gold quality
left testis	UBERON:0004533	65.99	gold quality
calcaneal tendon	UBERON:0003701	58.19	gold quality
islet of Langerhans	UBERON:0000006	57.13	gold quality
cortical plate	UBERON:0005343	55.12	silver quality
pancreas	UBERON:0001264	53.61	gold quality
spleen	UBERON:0002106	53.59	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.97	gold quality
liver	UBERON:0002107	52.38	silver quality
bone marrow	UBERON:0002371	52.37	silver quality
tonsil	UBERON:0002372	52.11	gold quality
right lobe of liver	UBERON:0001114	51.46	gold quality
body of pancreas	UBERON:0001150	51.32	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.23	gold quality
omental fat pad	UBERON:0010414	51.19	gold quality
monocyte	CL:0000576	51.11	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	50.87	silver quality
urinary bladder	UBERON:0001255	50.64	gold quality
prefrontal cortex	UBERON:0000451	50.51	gold quality
adipose tissue	UBERON:0001013	50.48	gold quality
vermiform appendix	UBERON:0001154	50.22	gold quality
muscle of leg	UBERON:0001383	49.87	gold quality
lymph node	UBERON:0000029	49.81	gold quality
subcutaneous adipose tissue	UBERON:0002190	49.72	gold quality
right adrenal gland cortex	UBERON:0035827	49.59	gold quality
blood	UBERON:0000178	49.44	silver quality
gastrocnemius	UBERON:0001388	49.22	gold quality
heart left ventricle	UBERON:0002084	48.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.04

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.