LINC02096

Summary

LINC02096 (long intergenic non-protein coding RNA 2096, HGNC:52947) is a long non-coding RNA gene on chromosome 17p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52947
Approved symbol	LINC02096
Name	long intergenic non-protein coding RNA 2096
Location	17p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238212
Ensembl biotype	lncRNA
Entrez	107984977
RNAcentral	URS0002A3CD36 — lncRNA, 1745 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000445035, ENST00000652815, ENST00000660746, ENST00000660966, ENST00000661145, ENST00000662040, ENST00000664152, ENST00000665225, ENST00000665893, ENST00000754170, ENST00000754171, ENST00000754172, ENST00000754173, ENST00000754174, ENST00000754175, ENST00000754176

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445035 — 4 exons

Exon	Start	End
ENSE00001645601	14837941	14838216
ENSE00001663373	14839969	14840046
ENSE00001793247	14900261	14900557
ENSE00002687315	14834600	14834942

Expression profiles

Bgee: expression breadth broad, 31 present calls, max score 85.76.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0489 / max 14.6347, expressed in 17 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
159660	0.0489	17

Top tissues by expression

40 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.76	gold quality
quadriceps femoris	UBERON:0001377	84.79	gold quality
prostate gland	UBERON:0002367	76.62	gold quality
caudate nucleus	UBERON:0001873	75.46	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.45	gold quality
cerebellar vermis	UBERON:0004720	75.07	gold quality
liver	UBERON:0002107	69.37	silver quality
kidney	UBERON:0002113	67.11	silver quality
heart	UBERON:0000948	66.47	silver quality
bone marrow	UBERON:0002371	66.32	silver quality
skeletal muscle tissue	UBERON:0001134	64.20	silver quality
spinal cord	UBERON:0002240	61.10	silver quality
thymus	UBERON:0002370	60.97	silver quality
lung	UBERON:0002048	60.85	silver quality
tonsil	UBERON:0002372	59.83	silver quality
testis	UBERON:0000473	58.65	gold quality
right testis	UBERON:0004534	57.90	gold quality
left testis	UBERON:0004533	56.53	gold quality
multicellular organism	UBERON:0000468	55.96	gold quality
prefrontal cortex	UBERON:0000451	54.49	gold quality
monocyte	CL:0000576	54.12	gold quality
blood	UBERON:0000178	52.97	gold quality
frontal cortex	UBERON:0001870	51.97	gold quality
brain	UBERON:0000955	50.47	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.40	gold quality
lower esophagus muscularis layer	UBERON:0035833	48.13	gold quality
pancreas	UBERON:0001264	45.30	silver quality
body of pancreas	UBERON:0001150	42.94	silver quality
right frontal lobe	UBERON:0002810	42.89	gold quality
body of stomach	UBERON:0001161	42.33	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.