LINC02097

Summary

LINC02097 (long intergenic non-protein coding RNA 2097, HGNC:52948) is a long non-coding RNA gene on chromosome 17q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52948
Approved symbol	LINC02097
Name	long intergenic non-protein coding RNA 2097
Location	17q24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226101
Ensembl biotype	lncRNA
Entrez	101928205
RNAcentral	URS000075AAE6 — lncRNA, 2079 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000419257, ENST00000654175, ENST00000665568, ENST00000666489

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419257 — 6 exons

Exon	Start	End
ENSE00001688551	72077213	72077309
ENSE00001718229	72083832	72083961
ENSE00001766642	72089087	72089675
ENSE00001783638	72092930	72093481
ENSE00001784948	72072333	72072842
ENSE00001794433	72081950	72082134

Expression profiles

Bgee: expression breadth broad, 90 present calls, max score 89.77.

Top tissues by expression

196 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.77	gold quality
sperm	CL:0000019	66.74	silver quality
ventricular zone	UBERON:0003053	62.40	gold quality
sural nerve	UBERON:0015488	62.10	silver quality
ganglionic eminence	UBERON:0004023	60.03	gold quality
cortical plate	UBERON:0005343	59.93	silver quality
body of pancreas	UBERON:0001150	57.34	gold quality
minor salivary gland	UBERON:0001830	57.08	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.41	gold quality
muscle of leg	UBERON:0001383	55.93	gold quality
pancreas	UBERON:0001264	55.51	gold quality
tonsil	UBERON:0002372	55.51	silver quality
gastrocnemius	UBERON:0001388	55.38	gold quality
saliva-secreting gland	UBERON:0001044	54.59	gold quality
mouth mucosa	UBERON:0003729	54.51	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.84	gold quality
heart left ventricle	UBERON:0002084	51.58	gold quality
calcaneal tendon	UBERON:0003701	51.36	silver quality
cardiac ventricle	UBERON:0002082	51.16	gold quality
corpus callosum	UBERON:0002336	50.85	gold quality
heart	UBERON:0000948	49.00	gold quality
monocyte	CL:0000576	48.93	silver quality
prefrontal cortex	UBERON:0000451	48.73	silver quality
skeletal muscle tissue	UBERON:0001134	47.61	silver quality
islet of Langerhans	UBERON:0000006	47.58	gold quality
skin of leg	UBERON:0001511	47.39	gold quality
skin of abdomen	UBERON:0001416	47.27	gold quality
smooth muscle tissue	UBERON:0001135	47.24	gold quality
skin of hip	UBERON:0001554	46.61	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.