LINC02099

Summary

LINC02099 (long intergenic non-protein coding RNA 2099, HGNC:52953) is a long non-coding RNA gene on chromosome 8p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52953
Approved symbol	LINC02099
Name	long intergenic non-protein coding RNA 2099
Location	8p12
Locus type	RNA, long non-coding
Status	Approved
Aliases	Slt, AC145110.1
Ensembl gene	ENSG00000253490
Ensembl biotype	lncRNA
Entrez	101929450
RNAcentral	URS00007E3400 — lncRNA, 2849 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000517491, ENST00000522158, ENST00000523123

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517491 — 4 exons

Exon	Start	End
ENSE00002097334	29796835	29798492
ENSE00002100667	29790332	29790447
ENSE00002105804	29748350	29748579
ENSE00002106982	29791095	29791881

Expression profiles

Bgee: expression breadth broad, 69 present calls, max score 77.05.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2098 / max 87.8707, expressed in 24 samples.

FANTOM5 promoters (8 alternative TSS)

Promoter ID	TPM avg	Samples expressed
88264	0.0698	13
88258	0.0601	16
88263	0.0316	10
88259	0.0224	11
88260	0.0083	5
88262	0.0080	4
88261	0.0054	2
88257	0.0043	1

Top tissues by expression

178 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tendon of biceps brachii	UBERON:0008188	77.05	gold quality
tendon	UBERON:0000043	71.87	gold quality
bone marrow cell	CL:0002092	68.90	silver quality
vena cava	UBERON:0004087	67.15	gold quality
cerebellar hemisphere	UBERON:0002245	64.23	gold quality
lymph node	UBERON:0000029	62.28	gold quality
buccal mucosa cell	CL:0002336	61.91	gold quality
medial globus pallidus	UBERON:0002477	61.44	silver quality
layer of synovial tissue	UBERON:0007616	60.93	silver quality
tonsil	UBERON:0002372	59.78	gold quality
cerebellar vermis	UBERON:0004720	59.60	gold quality
myocardium	UBERON:0002349	59.14	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	58.57	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	58.45	gold quality
synovial joint	UBERON:0002217	58.17	silver quality
adipose tissue	UBERON:0001013	58.05	gold quality
lower lobe of lung	UBERON:0008949	58.03	silver quality
nipple	UBERON:0002030	57.89	gold quality
saphenous vein	UBERON:0007318	56.72	gold quality
liver	UBERON:0002107	56.37	silver quality
trabecular bone tissue	UBERON:0002483	56.01	gold quality
pharyngeal mucosa	UBERON:0000355	56.00	gold quality
penis	UBERON:0000989	55.98	silver quality
lateral globus pallidus	UBERON:0002476	55.95	gold quality
lateral nuclear group of thalamus	UBERON:0002736	55.79	gold quality
nasal cavity mucosa	UBERON:0001826	55.76	gold quality
body of tongue	UBERON:0011876	55.56	gold quality
tongue	UBERON:0001723	54.80	gold quality
vermiform appendix	UBERON:0001154	54.76	gold quality
substantia nigra pars compacta	UBERON:0001965	54.74	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.89

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.