LINC02100

Summary

LINC02100 (long intergenic non-protein coding RNA 2100, HGNC:52955) is a long non-coding RNA gene on chromosome 5p14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52955
Approved symbol	LINC02100
Name	long intergenic non-protein coding RNA 2100
Location	5p14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248693
Ensembl biotype	lncRNA
Entrez	107986408
RNAcentral	URS0002A2188A — lncRNA, 636 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000512978, ENST00000760636, ENST00000760637

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512978 — 2 exons

Exon	Start	End
ENSE00002057116	18745998	18746173
ENSE00002061889	18704433	18704494

Expression profiles

Bgee: expression breadth ubiquitous, 102 present calls, max score 88.85.

FANTOM5 (CAGE): breadth broad, TPM avg 1.0996 / max 22.7816, expressed in 465 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
61074	0.6680	331
61075	0.4316	215

Top tissues by expression

102 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.85	gold quality
leukocyte	CL:0000738	71.45	gold quality
monocyte	CL:0000576	71.32	gold quality
granulocyte	CL:0000094	69.41	gold quality
blood	UBERON:0000178	68.96	gold quality
superior frontal gyrus	UBERON:0002661	67.73	gold quality
lymph node	UBERON:0000029	66.92	gold quality
duodenum	UBERON:0002114	66.60	gold quality
bone marrow	UBERON:0002371	66.21	gold quality
placenta	UBERON:0001987	63.66	gold quality
vermiform appendix	UBERON:0001154	63.45	gold quality
islet of Langerhans	UBERON:0000006	63.13	gold quality
smooth muscle tissue	UBERON:0001135	63.05	gold quality
liver	UBERON:0002107	60.38	gold quality
muscle of leg	UBERON:0001383	59.34	gold quality
spleen	UBERON:0002106	59.12	gold quality
cortex of kidney	UBERON:0001225	58.64	gold quality
calcaneal tendon	UBERON:0003701	58.47	gold quality
gastrocnemius	UBERON:0001388	57.99	gold quality
left adrenal gland cortex	UBERON:0035825	57.89	gold quality
right lobe of liver	UBERON:0001114	57.35	gold quality
corpus callosum	UBERON:0002336	57.22	gold quality
right lung	UBERON:0002167	57.03	gold quality
lung	UBERON:0002048	56.53	gold quality
heart left ventricle	UBERON:0002084	56.51	gold quality
right ovary	UBERON:0002118	56.46	gold quality
Brodmann (1909) area 9	UBERON:0013540	56.43	gold quality
adrenal gland	UBERON:0002369	56.26	gold quality
thoracic aorta	UBERON:0001515	56.23	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	56.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.