LINC02101

Summary

LINC02101 (long intergenic non-protein coding RNA 2101, HGNC:52956) is a long non-coding RNA gene on chromosome 5q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52956
Approved symbol	LINC02101
Name	long intergenic non-protein coding RNA 2101
Location	5q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248132
Ensembl biotype	lncRNA
Entrez	101928569
RNAcentral	URS000075C3B5 — lncRNA, 1175 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000505861, ENST00000659991, ENST00000660090, ENST00000661072, ENST00000738711, ENST00000738712, ENST00000738713, ENST00000738714, ENST00000738715, ENST00000738716, ENST00000738717, ENST00000738718, ENST00000738719, ENST00000738720

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505861 — 5 exons

Exon	Start	End
ENSE00002022169	58116462	58116651
ENSE00002045989	58107631	58108415
ENSE00002049785	58115839	58115977
ENSE00002087597	58118471	58118509
ENSE00003866621	58122319	58122375

Expression profiles

Bgee: expression breadth broad, 88 present calls, max score 93.81.

Top tissues by expression

88 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	93.81	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.22	silver quality
islet of Langerhans	UBERON:0000006	62.34	gold quality
cortical plate	UBERON:0005343	58.51	silver quality
calcaneal tendon	UBERON:0003701	54.23	gold quality
gall bladder	UBERON:0002110	52.52	gold quality
urinary bladder	UBERON:0001255	52.44	gold quality
monocyte	CL:0000576	52.37	silver quality
endometrium	UBERON:0001295	52.25	silver quality
placenta	UBERON:0001987	50.77	gold quality
nucleus accumbens	UBERON:0001882	50.14	gold quality
liver	UBERON:0002107	49.72	silver quality
prefrontal cortex	UBERON:0000451	48.84	gold quality
muscle of leg	UBERON:0001383	48.81	silver quality
lymph node	UBERON:0000029	48.36	silver quality
blood	UBERON:0000178	48.03	silver quality
gastrocnemius	UBERON:0001388	47.60	silver quality
myometrium	UBERON:0001296	46.99	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.93	silver quality
corpus callosum	UBERON:0002336	46.78	silver quality
right lobe of liver	UBERON:0001114	46.28	gold quality
kidney	UBERON:0002113	46.10	silver quality
adult mammalian kidney	UBERON:0000082	45.85	gold quality
heart	UBERON:0000948	45.35	gold quality
heart left ventricle	UBERON:0002084	45.20	silver quality
putamen	UBERON:0001874	44.48	gold quality
brain	UBERON:0000955	44.47	gold quality
fundus of stomach	UBERON:0001160	44.33	gold quality
lower esophagus mucosa	UBERON:0035834	44.27	silver quality
saliva-secreting gland	UBERON:0001044	43.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.