LINC02104

Summary

LINC02104 (long intergenic non-protein coding RNA 2104, HGNC:52959) is a long non-coding RNA gene on chromosome 5p13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52959
Approved symbol	LINC02104
Name	long intergenic non-protein coding RNA 2104
Location	5p13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271334
Ensembl biotype	lncRNA
Entrez	101926940
RNAcentral	URS000075EFA5 — lncRNA, 615 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000603514, ENST00000604954, ENST00000821776, ENST00000821777, ENST00000821778, ENST00000821779

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000603514 — 3 exons

Exon	Start	End
ENSE00003569106	39524251	39524726
ENSE00003649588	39521519	39521627
ENSE00003859509	39520398	39520462

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 69.60.

FANTOM5 (CAGE): breadth broad, TPM avg 0.3573 / max 22.1598, expressed in 183 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
56210	0.3573	183

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
stromal cell of endometrium	CL:0002255	69.60	gold quality
subcutaneous adipose tissue	UBERON:0002190	67.31	gold quality
adipose tissue	UBERON:0001013	64.94	gold quality
ganglionic eminence	UBERON:0004023	64.09	gold quality
left coronary artery	UBERON:0001626	62.82	gold quality
omental fat pad	UBERON:0010414	61.85	gold quality
right atrium auricular region	UBERON:0006631	61.49	gold quality
apex of heart	UBERON:0002098	61.35	gold quality
right coronary artery	UBERON:0001625	61.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.07	gold quality
thoracic mammary gland	UBERON:0005200	60.91	gold quality
heart	UBERON:0000948	60.63	gold quality
cortical plate	UBERON:0005343	60.39	gold quality
islet of Langerhans	UBERON:0000006	59.96	gold quality
endometrium	UBERON:0001295	59.59	gold quality
heart left ventricle	UBERON:0002084	59.09	gold quality
ascending aorta	UBERON:0001496	58.80	gold quality
gall bladder	UBERON:0002110	58.67	gold quality
calcaneal tendon	UBERON:0003701	58.51	gold quality
placenta	UBERON:0001987	58.38	gold quality
thoracic aorta	UBERON:0001515	58.16	gold quality
skeletal muscle tissue	UBERON:0001134	57.93	gold quality
spleen	UBERON:0002106	57.41	gold quality
lung	UBERON:0002048	57.26	gold quality
muscle tissue	UBERON:0002385	57.22	gold quality
left adrenal gland	UBERON:0001234	57.00	gold quality
adult mammalian kidney	UBERON:0000082	56.96	gold quality
rectum	UBERON:0001052	56.72	gold quality
vermiform appendix	UBERON:0001154	56.55	gold quality
adrenal gland	UBERON:0002369	56.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.