LINC02107

Summary

LINC02107 (long intergenic non-protein coding RNA 2107, HGNC:52962) is a long non-coding RNA gene on chromosome 5p13.2.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52962
Approved symbol	LINC02107
Name	long intergenic non-protein coding RNA 2107
Location	5p13.2
Locus type	RNA, long non-coding
Status	Approved
Entrez	105374731
RNAcentral	URS0000BC463B — lncRNA, 464 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000037803 (5:38149800 C>A,T), RS1000044298 (5:38106940 G>A,T), RS1000090686 (5:38065782 G>C,T), RS1000108297 (5:38100898 T>A), RS1000121753 (5:38131634 A>G), RS1000182928 (5:38137593 G>A,T), RS1000184857 (5:38044058 C>A,T), RS1000192676 (5:38169397 C>T), RS1000196798 (5:38125215 G>A), RS1000198228 (5:38083995 C>A,G,T), RS1000200959 (5:38050024 A>G), RS1000205749 (5:38088893 A>G), RS1000212461 (5:38054530 T>C), RS1000245128 (5:38071786 T>C), RS1000246204 (5:38174692 C>G)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

CTD chemical–gene interactions

1 total (human), top 1 by PubMed support.

Chemical	Actions (top 5)	PubMed papers
Aflatoxin B1	decreases methylation	1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.