LINC02108

Summary

LINC02108 (long intergenic non-protein coding RNA 2108, HGNC:52963) is a long non-coding RNA gene on chromosome 5q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52963
Approved symbol	LINC02108
Name	long intergenic non-protein coding RNA 2108
Location	5q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250127
Ensembl biotype	lncRNA
Entrez	101928600
RNAcentral	URS000075D474 — lncRNA, 1184 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000504333

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504333 — 4 exons

Exon	Start	End
ENSE00002021551	58547135	58547371
ENSE00002033930	58558186	58558243
ENSE00002056416	58541567	58542387
ENSE00002076867	58546092	58546159

Expression profiles

Bgee: expression breadth broad, 45 present calls, max score 71.61.

Top tissues by expression

45 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
small intestine	UBERON:0002108	71.61	silver quality
liver	UBERON:0002107	67.81	silver quality
ventricular zone	UBERON:0003053	59.55	gold quality
ganglionic eminence	UBERON:0004023	58.44	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.61	gold quality
blood	UBERON:0000178	49.19	silver quality
prefrontal cortex	UBERON:0000451	47.78	silver quality
muscle of leg	UBERON:0001383	47.00	gold quality
cerebellum	UBERON:0002037	46.67	silver quality
gastrocnemius	UBERON:0001388	46.41	gold quality
ovary	UBERON:0000992	44.88	silver quality
heart left ventricle	UBERON:0002084	44.79	silver quality
right atrium auricular region	UBERON:0006631	44.68	silver quality
placenta	UBERON:0001987	44.55	silver quality
heart	UBERON:0000948	44.40	silver quality
tibial artery	UBERON:0007610	44.36	silver quality
thoracic mammary gland	UBERON:0005200	44.27	silver quality
myometrium	UBERON:0001296	43.51	silver quality
amygdala	UBERON:0001876	42.27	silver quality
adult mammalian kidney	UBERON:0000082	42.11	silver quality
subcutaneous adipose tissue	UBERON:0002190	41.08	silver quality
left adrenal gland	UBERON:0001234	40.90	silver quality
colon	UBERON:0001155	40.73	silver quality
caudate nucleus	UBERON:0001873	40.62	silver quality
skin of leg	UBERON:0001511	40.49	silver quality
left coronary artery	UBERON:0001626	40.17	silver quality
ascending aorta	UBERON:0001496	40.16	silver quality
endocervix	UBERON:0000458	39.99	silver quality
muscle layer of sigmoid colon	UBERON:0035805	39.61	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	39.50	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.