LINC02112

Summary

LINC02112 (long intergenic non-protein coding RNA 2112, HGNC:27756) is a long non-coding RNA gene on chromosome 5p15.31-p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27756
Approved symbol	LINC02112
Name	long intergenic non-protein coding RNA 2112
Location	5p15.31-p15.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249781
Ensembl biotype	lncRNA
Entrez	285692
RNAcentral	URS000075AAD1 — lncRNA, 1845 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000511616, ENST00000512976, ENST00000606169, ENST00000606222, ENST00000606744, ENST00000660091, ENST00000746077, ENST00000746078, ENST00000746079

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000511616 — 13 exons

Exon	Start	End
ENSE00002019302	9883333	9883367
ENSE00002020239	9641315	9641505
ENSE00002021650	9903525	9903826
ENSE00002038288	9714080	9714239
ENSE00002045227	9641872	9641941
ENSE00002058835	9713066	9713218
ENSE00002060385	9659901	9659981
ENSE00002069235	9713785	9713851
ENSE00002075905	9902652	9902753
ENSE00002076183	9765471	9765693
ENSE00002076574	9712172	9712391
ENSE00002077375	9883923	9884004
ENSE00003697615	9659421	9659581

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 82.55.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0365 / max 41.4998, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
60879	0.0365	3

Top tissues by expression

219 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.55	gold quality
left testis	UBERON:0004533	80.08	gold quality
right testis	UBERON:0004534	79.34	gold quality
testis	UBERON:0000473	76.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.86	gold quality
sural nerve	UBERON:0015488	64.68	gold quality
stromal cell of endometrium	CL:0002255	62.42	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.76	silver quality
sperm	CL:0000019	59.15	gold quality
calcaneal tendon	UBERON:0003701	57.53	gold quality
leukocyte	CL:0000738	55.35	gold quality
monocyte	CL:0000576	55.02	gold quality
islet of Langerhans	UBERON:0000006	53.63	gold quality
muscle of leg	UBERON:0001383	50.33	gold quality
corpus callosum	UBERON:0002336	49.87	silver quality
buccal mucosa cell	CL:0002336	49.71	gold quality
lymph node	UBERON:0000029	49.29	gold quality
gastrocnemius	UBERON:0001388	49.23	gold quality
putamen	UBERON:0001874	49.22	gold quality
adrenal tissue	UBERON:0018303	48.93	gold quality
ectocervix	UBERON:0012249	48.45	gold quality
pancreas	UBERON:0001264	48.43	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.22	gold quality
tendon	UBERON:0000043	47.95	gold quality
caudate nucleus	UBERON:0001873	47.86	gold quality
body of pancreas	UBERON:0001150	47.67	gold quality
prefrontal cortex	UBERON:0000451	47.37	gold quality
endometrium	UBERON:0001295	47.19	gold quality
left lobe of thyroid gland	UBERON:0001120	46.53	gold quality
thyroid gland	UBERON:0002046	46.31	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.20

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.