LINC02113

Summary

LINC02113 (long intergenic non-protein coding RNA 2113, HGNC:52967) is a long non-coding RNA gene on chromosome 5q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52967
Approved symbol	LINC02113
Name	long intergenic non-protein coding RNA 2113
Location	5q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249515
Ensembl biotype	lncRNA
Entrez	102724855
RNAcentral	URS000075E091 — lncRNA, 1033 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 29 lncRNA

ENST00000510302, ENST00000510435, ENST00000844080, ENST00000844081, ENST00000844082, ENST00000844083, ENST00000844084, ENST00000844085, ENST00000844086, ENST00000844087, ENST00000844088, ENST00000844089, ENST00000844090, ENST00000844091, ENST00000844092, ENST00000844093, ENST00000844094, ENST00000844095, ENST00000844096, ENST00000844097, ENST00000844098, ENST00000844099, ENST00000844100, ENST00000844101, ENST00000844102, ENST00000844103, ENST00000844104, ENST00000844105, ENST00000850666

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000510302 — 6 exons

Exon	Start	End
ENSE00002049507	99549413	99549532
ENSE00004034109	99436338	99436441
ENSE00004034111	99499070	99499203
ENSE00004034112	99537850	99537921
ENSE00004270573	99410446	99410862
ENSE00004270581	99577723	99577959

Expression profiles

Bgee: expression breadth broad, 57 present calls, max score 96.65.

Top tissues by expression

57 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.65	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.17	gold quality
left testis	UBERON:0004533	71.14	gold quality
testis	UBERON:0000473	70.49	gold quality
right testis	UBERON:0004534	70.11	gold quality
placenta	UBERON:0001987	61.18	gold quality
monocyte	CL:0000576	60.90	gold quality
gall bladder	UBERON:0002110	59.35	gold quality
multicellular organism	UBERON:0000468	58.74	gold quality
gastrocnemius	UBERON:0001388	57.62	gold quality
left uterine tube	UBERON:0001303	55.50	gold quality
corpus callosum	UBERON:0002336	55.15	gold quality
heart left ventricle	UBERON:0002084	54.56	gold quality
body of pancreas	UBERON:0001150	54.43	gold quality
amygdala	UBERON:0001876	54.42	gold quality
subcutaneous adipose tissue	UBERON:0002190	51.23	gold quality
right atrium auricular region	UBERON:0006631	50.78	gold quality
small intestine	UBERON:0002108	49.26	gold quality
small intestine Peyer’s patch	UBERON:0003454	49.11	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.08	gold quality
lower esophagus muscularis layer	UBERON:0035833	48.58	gold quality
intestine	UBERON:0000160	48.52	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	48.38	gold quality
hypothalamus	UBERON:0001898	47.50	gold quality
muscle layer of sigmoid colon	UBERON:0035805	46.84	gold quality
tibial artery	UBERON:0007610	46.80	gold quality
Ammon’s horn	UBERON:0001954	46.19	gold quality
colon	UBERON:0001155	46.18	gold quality
transverse colon	UBERON:0001157	46.16	gold quality
nucleus accumbens	UBERON:0001882	46.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.