LINC02116

Summary

LINC02116 (long intergenic non-protein coding RNA 2116, HGNC:52971) is a long non-coding RNA gene on chromosome 5p15.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52971
Approved symbol	LINC02116
Name	long intergenic non-protein coding RNA 2116
Location	5p15.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250417
Ensembl biotype	lncRNA
Entrez	101929034
RNAcentral	URS000075CEED — lncRNA, 498 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000509455, ENST00000820467, ENST00000820468

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000509455 — 2 exons

Exon	Start	End
ENSE00004226456	1856403	1857250
ENSE00004226457	1855929	1856296

Expression profiles

Bgee: expression breadth broad, 47 present calls, max score 95.29.

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	95.29	gold quality
right testis	UBERON:0004534	70.92	gold quality
left testis	UBERON:0004533	68.71	gold quality
testis	UBERON:0000473	66.21	gold quality
monocyte	CL:0000576	62.71	gold quality
sural nerve	UBERON:0015488	52.10	silver quality
duodenum	UBERON:0002114	49.95	gold quality
gastrocnemius	UBERON:0001388	48.73	silver quality
cerebellar vermis	UBERON:0004720	48.63	gold quality
tendon of biceps brachii	UBERON:0008188	47.81	gold quality
lower esophagus muscularis layer	UBERON:0035833	46.80	gold quality
saphenous vein	UBERON:0007318	45.31	gold quality
thymus	UBERON:0002370	45.24	gold quality
small intestine	UBERON:0002108	44.71	gold quality
tibial nerve	UBERON:0001323	44.63	gold quality
muscle layer of sigmoid colon	UBERON:0035805	44.57	gold quality
thoracic aorta	UBERON:0001515	44.53	silver quality
buccal mucosa cell	CL:0002336	44.03	gold quality
anatomical system	UBERON:0000467	44.00	gold quality
cerebellar hemisphere	UBERON:0002245	43.81	silver quality
multicellular organism	UBERON:0000468	43.73	gold quality
material anatomical entity	UBERON:0000465	43.71	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
anterior cingulate cortex	UBERON:0009835	43.34	gold quality
tonsil	UBERON:0002372	43.24	gold quality
amygdala	UBERON:0001876	43.18	gold quality
putamen	UBERON:0001874	43.14	gold quality
body of stomach	UBERON:0001161	42.99	gold quality
body of pancreas	UBERON:0001150	42.92	silver quality
tibial artery	UBERON:0007610	42.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.49

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.