LINC02117

Summary

LINC02117 (long intergenic non-protein coding RNA 2117, HGNC:52972) is a long non-coding RNA gene on chromosome 5p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52972
Approved symbol	LINC02117
Name	long intergenic non-protein coding RNA 2117
Location	5p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248539
Ensembl biotype	lncRNA
Entrez	105374728
RNAcentral	URS0002A3AF95 — lncRNA, 664 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000513673, ENST00000811759, ENST00000811760

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513673 — 4 exons

Exon	Start	End
ENSE00002051964	37919740	37919790
ENSE00002075293	37920831	37920869
ENSE00002085498	37899363	37899668
ENSE00002087271	37919954	37920097

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 79.71.

Top tissues by expression

86 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.71	gold quality
islet of Langerhans	UBERON:0000006	58.09	gold quality
primary visual cortex	UBERON:0002436	55.30	gold quality
calcaneal tendon	UBERON:0003701	55.18	gold quality
testis	UBERON:0000473	54.89	gold quality
right testis	UBERON:0004534	54.85	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.80	gold quality
monocyte	CL:0000576	54.58	gold quality
left testis	UBERON:0004533	54.09	gold quality
liver	UBERON:0002107	53.87	silver quality
smooth muscle tissue	UBERON:0001135	52.29	gold quality
blood	UBERON:0000178	51.45	gold quality
duodenum	UBERON:0002114	49.89	gold quality
popliteal artery	UBERON:0002250	49.71	gold quality
tibial artery	UBERON:0007610	49.63	gold quality
prefrontal cortex	UBERON:0000451	49.33	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.96	gold quality
muscle of leg	UBERON:0001383	48.78	gold quality
right lobe of liver	UBERON:0001114	48.21	silver quality
gastrocnemius	UBERON:0001388	48.05	gold quality
bone marrow	UBERON:0002371	48.00	silver quality
kidney	UBERON:0002113	47.80	silver quality
ascending aorta	UBERON:0001496	47.52	gold quality
cerebellar cortex	UBERON:0002129	47.32	silver quality
thoracic aorta	UBERON:0001515	47.27	gold quality
ectocervix	UBERON:0012249	47.26	gold quality
cerebellar hemisphere	UBERON:0002245	47.22	silver quality
multicellular organism	UBERON:0000468	46.54	gold quality
descending thoracic aorta	UBERON:0002345	46.52	gold quality
right hemisphere of cerebellum	UBERON:0014890	46.46	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.