LINC02120

Summary

LINC02120 (long intergenic non-protein coding RNA 2120, HGNC:27971) is a long non-coding RNA gene on chromosome 5p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27971
Approved symbol	LINC02120
Name	long intergenic non-protein coding RNA 2120
Location	5p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248279
Ensembl biotype	lncRNA
Entrez	340113
RNAcentral	URS000075CD87 — lncRNA, 2018 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000505518, ENST00000507693

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505518 — 6 exons

Exon	Start	End
ENSE00002049064	32947443	32947821
ENSE00002052449	32950116	32950283
ENSE00002055057	32961141	32961259
ENSE00002058535	32958614	32958697
ENSE00002072441	32948943	32949100
ENSE00002074100	32961368	32962467

Expression profiles

Bgee: expression breadth broad, 50 present calls, max score 83.73.

Top tissues by expression

50 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.73	gold quality
cortical plate	UBERON:0005343	60.65	gold quality
left coronary artery	UBERON:0001626	54.21	gold quality
blood	UBERON:0000178	51.90	silver quality
muscle of leg	UBERON:0001383	50.63	gold quality
gastrocnemius	UBERON:0001388	49.81	gold quality
monocyte	CL:0000576	49.03	silver quality
myometrium	UBERON:0001296	48.54	silver quality
anterior cingulate cortex	UBERON:0009835	48.23	gold quality
lower esophagus muscularis layer	UBERON:0035833	46.47	gold quality
ectocervix	UBERON:0012249	46.15	gold quality
heart left ventricle	UBERON:0002084	45.39	gold quality
tibial artery	UBERON:0007610	45.39	gold quality
fallopian tube	UBERON:0003889	44.72	gold quality
omental fat pad	UBERON:0010414	44.04	silver quality
esophagus mucosa	UBERON:0002469	43.63	gold quality
ascending aorta	UBERON:0001496	43.56	silver quality
thoracic aorta	UBERON:0001515	43.29	silver quality
vagina	UBERON:0000996	43.27	silver quality
left lobe of thyroid gland	UBERON:0001120	42.85	silver quality
muscle layer of sigmoid colon	UBERON:0035805	42.57	silver quality
subcutaneous adipose tissue	UBERON:0002190	42.17	gold quality
left adrenal gland	UBERON:0001234	42.08	silver quality
zone of skin	UBERON:0000014	42.04	gold quality
right atrium auricular region	UBERON:0006631	42.00	silver quality
prostate gland	UBERON:0002367	41.96	gold quality
skin of abdomen	UBERON:0001416	41.79	silver quality
skin of leg	UBERON:0001511	41.48	gold quality
stomach	UBERON:0000945	41.39	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	41.24	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.