LINC02125

Summary

LINC02125 (long intergenic non-protein coding RNA 2125, HGNC:52982) is a long non-coding RNA gene on chromosome 16q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52982
Approved symbol	LINC02125
Name	long intergenic non-protein coding RNA 2125
Location	16q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250514
Ensembl biotype	lncRNA
Entrez	101928203
RNAcentral	URS0000620464 — lncRNA, 2198 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000512279, ENST00000567777, ENST00000751836, ENST00000751837, ENST00000751919, ENST00000751920, ENST00000751921, ENST00000751922

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512279 — 4 exons

Exon	Start	End
ENSE00002044200	76634998	76635149
ENSE00002051341	76656668	76658478
ENSE00002060234	76655557	76655664
ENSE00003641688	76635497	76635623

Expression profiles

Bgee: expression breadth broad, 46 present calls, max score 82.45.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1529 / max 17.1412, expressed in 71 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
155058	0.1529	71

Top tissues by expression

46 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.45	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.46	gold quality
blood	UBERON:0000178	74.35	silver quality
ventricular zone	UBERON:0003053	58.82	silver quality
lymph node	UBERON:0000029	50.72	silver quality
testis	UBERON:0000473	49.88	gold quality
prefrontal cortex	UBERON:0000451	49.66	gold quality
urinary bladder	UBERON:0001255	49.59	gold quality
pancreas	UBERON:0001264	48.79	silver quality
myometrium	UBERON:0001296	48.25	silver quality
prostate gland	UBERON:0002367	47.90	gold quality
placenta	UBERON:0001987	47.31	gold quality
heart left ventricle	UBERON:0002084	47.06	gold quality
left testis	UBERON:0004533	47.06	gold quality
stomach	UBERON:0000945	46.84	silver quality
heart	UBERON:0000948	46.40	silver quality
right testis	UBERON:0004534	45.06	gold quality
superior frontal gyrus	UBERON:0002661	45.04	silver quality
islet of Langerhans	UBERON:0000006	44.58	silver quality
adipose tissue	UBERON:0001013	44.37	silver quality
cerebellar hemisphere	UBERON:0002245	43.35	silver quality
right hemisphere of cerebellum	UBERON:0014890	42.39	silver quality
left adrenal gland	UBERON:0001234	42.38	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.90	silver quality
subcutaneous adipose tissue	UBERON:0002190	40.95	silver quality
muscle layer of sigmoid colon	UBERON:0035805	40.93	silver quality
substantia nigra	UBERON:0002038	40.88	silver quality
esophagus	UBERON:0001043	40.86	silver quality
lower esophagus muscularis layer	UBERON:0035833	40.82	silver quality
amygdala	UBERON:0001876	40.52	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.