LINC02128

Summary

LINC02128 (long intergenic non-protein coding RNA 2128, HGNC:52986) is a long non-coding RNA gene on chromosome 16q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52986
Approved symbol	LINC02128
Name	long intergenic non-protein coding RNA 2128
Location	16q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261241
Ensembl biotype	lncRNA
Entrez	102724940
RNAcentral	URS00026A23F7 — lncRNA, 1473 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 36 — 36 lncRNA

ENST00000567534, ENST00000570245, ENST00000576842, ENST00000641266, ENST00000641755, ENST00000654497, ENST00000654545, ENST00000655070, ENST00000655464, ENST00000655469, ENST00000657102, ENST00000657894, ENST00000661531, ENST00000661631, ENST00000661857, ENST00000662292, ENST00000662402, ENST00000663343, ENST00000665157, ENST00000665312, ENST00000666019, ENST00000666352, ENST00000666836, ENST00000668895, ENST00000669828, ENST00000669971, ENST00000816222, ENST00000816223, ENST00000816224, ENST00000816225, ENST00000816226, ENST00000816227, ENST00000816228, ENST00000816229, ENST00000816230, ENST00000816231

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000567534 — 4 exons

Exon	Start	End
ENSE00002583653	50884482	50884747
ENSE00002597125	50884209	50884322
ENSE00002612437	50893661	50893862
ENSE00002627036	50900463	50901061

Expression profiles

Bgee: expression breadth broad, 93 present calls, max score 73.33.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1215 / max 24.8729, expressed in 51 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
154041	0.0759	39
154040	0.0456	11

Top tissues by expression

93 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.33	gold quality
right lobe of liver	UBERON:0001114	69.81	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.54	gold quality
liver	UBERON:0002107	68.35	gold quality
myometrium	UBERON:0001296	64.31	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	62.67	gold quality
endometrium	UBERON:0001295	62.12	gold quality
skeletal muscle tissue	UBERON:0001134	61.68	silver quality
substantia nigra	UBERON:0002038	59.40	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.24	silver quality
sural nerve	UBERON:0015488	56.24	silver quality
fallopian tube	UBERON:0003889	55.89	gold quality
prefrontal cortex	UBERON:0000451	55.87	gold quality
islet of Langerhans	UBERON:0000006	55.03	gold quality
blood	UBERON:0000178	54.77	gold quality
right uterine tube	UBERON:0001302	54.53	gold quality
kidney	UBERON:0002113	53.84	gold quality
adult mammalian kidney	UBERON:0000082	53.54	gold quality
lymph node	UBERON:0000029	53.49	gold quality
pancreas	UBERON:0001264	52.20	gold quality
pituitary gland	UBERON:0000007	51.84	gold quality
adenohypophysis	UBERON:0002196	51.55	gold quality
monocyte	CL:0000576	51.39	silver quality
urinary bladder	UBERON:0001255	51.19	silver quality
cortex of kidney	UBERON:0001225	51.03	gold quality
frontal cortex	UBERON:0001870	50.60	gold quality
body of pancreas	UBERON:0001150	49.96	gold quality
primary visual cortex	UBERON:0002436	49.37	gold quality
placenta	UBERON:0001987	49.14	gold quality
metanephros cortex	UBERON:0010533	48.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.