LINC02138

Summary

LINC02138 (long intergenic non-protein coding RNA 2138, HGNC:52998) is a long non-coding RNA gene on chromosome 16q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52998
Approved symbol	LINC02138
Name	long intergenic non-protein coding RNA 2138
Location	16q24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000205015
Ensembl biotype	lncRNA
Entrez	400558
RNAcentral	URS0000157B8A — lncRNA, 1326 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000378340, ENST00000756057, ENST00000756058, ENST00000756059, ENST00000756060, ENST00000756061, ENST00000756062

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000378340 — 3 exons

Exon	Start	End
ENSE00001477141	89167137	89167306
ENSE00004105739	89166375	89166499
ENSE00004105747	89168109	89169149

Expression profiles

Bgee: expression breadth broad, 55 present calls, max score 87.11.

Top tissues by expression

55 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.11	gold quality
spleen	UBERON:0002106	74.67	gold quality
right lobe of liver	UBERON:0001114	62.28	gold quality
sural nerve	UBERON:0015488	54.24	silver quality
skin of leg	UBERON:0001511	53.92	gold quality
cerebellar hemisphere	UBERON:0002245	53.21	gold quality
cerebellar cortex	UBERON:0002129	53.20	gold quality
cerebellum	UBERON:0002037	53.19	gold quality
right hemisphere of cerebellum	UBERON:0014890	52.66	gold quality
metanephros cortex	UBERON:0010533	52.05	gold quality
adult mammalian kidney	UBERON:0000082	51.76	gold quality
skeletal muscle tissue	UBERON:0001134	51.46	silver quality
kidney	UBERON:0002113	51.22	gold quality
prefrontal cortex	UBERON:0000451	50.36	silver quality
primary visual cortex	UBERON:0002436	50.35	gold quality
bone marrow	UBERON:0002371	48.75	silver quality
placenta	UBERON:0001987	48.22	silver quality
right adrenal gland cortex	UBERON:0035827	46.58	gold quality
anterior cingulate cortex	UBERON:0009835	46.55	gold quality
left testis	UBERON:0004533	46.50	gold quality
right testis	UBERON:0004534	46.48	gold quality
blood	UBERON:0000178	46.29	silver quality
left adrenal gland cortex	UBERON:0035825	46.03	gold quality
testis	UBERON:0000473	45.78	gold quality
muscle of leg	UBERON:0001383	45.71	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.64	silver quality
gastrocnemius	UBERON:0001388	45.53	silver quality
myometrium	UBERON:0001296	45.46	silver quality
superior frontal gyrus	UBERON:0002661	45.24	silver quality
frontal cortex	UBERON:0001870	45.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.50

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.