LINC02139

Summary

LINC02139 (long intergenic non-protein coding RNA 2139, HGNC:52999) is a long non-coding RNA gene on chromosome 16q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52999
Approved symbol	LINC02139
Name	long intergenic non-protein coding RNA 2139
Location	16q24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000278214
Ensembl biotype	lncRNA
Entrez	400548
RNAcentral	URS000075B254 — lncRNA, 2015 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000612023, ENST00000774128, ENST00000774129, ENST00000830774, ENST00000830775, ENST00000830776, ENST00000830777

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000612023 — 3 exons

Exon	Start	End
ENSE00003733473	85143818	85143941
ENSE00003741285	85137150	85137209
ENSE00003748625	85147623	85149443

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 73.24.

Top tissues by expression

204 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar cortex	UBERON:0002129	73.24	gold quality
cerebellar hemisphere	UBERON:0002245	73.22	gold quality
right hemisphere of cerebellum	UBERON:0014890	72.65	gold quality
cerebellum	UBERON:0002037	71.08	gold quality
cerebellar vermis	UBERON:0004720	65.83	gold quality
buccal mucosa cell	CL:0002336	60.73	silver quality
ganglionic eminence	UBERON:0004023	57.67	silver quality
right lobe of liver	UBERON:0001114	54.19	gold quality
right atrium auricular region	UBERON:0006631	53.09	gold quality
cardiac atrium	UBERON:0002081	52.73	gold quality
myocardium	UBERON:0002349	52.58	gold quality
leukocyte	CL:0000738	52.47	silver quality
granulocyte	CL:0000094	52.24	gold quality
monocyte	CL:0000576	52.23	silver quality
hindlimb stylopod muscle	UBERON:0004252	52.13	silver quality
apex of heart	UBERON:0002098	52.12	gold quality
heart left ventricle	UBERON:0002084	51.65	gold quality
prefrontal cortex	UBERON:0000451	51.37	gold quality
spleen	UBERON:0002106	51.23	gold quality
cardiac ventricle	UBERON:0002082	51.19	gold quality
heart	UBERON:0000948	51.04	gold quality
right adrenal gland cortex	UBERON:0035827	50.52	gold quality
hypothalamus	UBERON:0001898	50.47	gold quality
cortex of kidney	UBERON:0001225	49.68	gold quality
left adrenal gland cortex	UBERON:0035825	49.66	gold quality
adrenal cortex	UBERON:0001235	49.13	gold quality
muscle of leg	UBERON:0001383	49.08	gold quality
primary visual cortex	UBERON:0002436	49.05	gold quality
adult mammalian kidney	UBERON:0000082	48.86	gold quality
right adrenal gland	UBERON:0001233	48.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.