LINC02140

Summary

LINC02140 (long intergenic non-protein coding RNA 2140, HGNC:53000) is a long non-coding RNA gene on chromosome 16q12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53000
Approved symbol	LINC02140
Name	long intergenic non-protein coding RNA 2140
Location	16q12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261803
Ensembl biotype	lncRNA
Entrez	100996345
RNAcentral	URS0000A77128 — lncRNA, 1810 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000562614, ENST00000566649, ENST00000660155, ENST00000661222, ENST00000668085, ENST00000669832, ENST00000720859, ENST00000720860

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562614 — 2 exons

Exon	Start	End
ENSE00002602996	54370566	54370699
ENSE00002609337	54367367	54367659

Expression profiles

Bgee: expression breadth broad, 45 present calls, max score 90.91.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0557 / max 48.7172, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
157421	0.0557	3

Top tissues by expression

177 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	90.91	gold quality
right testis	UBERON:0004534	77.12	gold quality
left testis	UBERON:0004533	77.02	gold quality
testis	UBERON:0000473	75.63	gold quality
pancreatic ductal cell	CL:0002079	73.75	silver quality
kidney epithelium	UBERON:0004819	73.62	gold quality
cardiac muscle of right atrium	UBERON:0003379	71.20	gold quality
left ventricle myocardium	UBERON:0006566	70.99	gold quality
cardiac atrium	UBERON:0002081	67.14	gold quality
islet of Langerhans	UBERON:0000006	66.81	gold quality
adult organism	UBERON:0007023	64.79	gold quality
tibialis anterior	UBERON:0001385	61.48	silver quality
heart left ventricle	UBERON:0002084	59.60	gold quality
cerebellar vermis	UBERON:0004720	59.58	gold quality
buccal mucosa cell	CL:0002336	59.33	silver quality
myocardium	UBERON:0002349	59.22	gold quality
cardiac ventricle	UBERON:0002082	58.26	gold quality
deltoid	UBERON:0001476	58.03	gold quality
adrenal cortex	UBERON:0001235	56.93	gold quality
epithelial cell of pancreas	CL:0000083	56.32	gold quality
coronary artery	UBERON:0001621	56.26	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.11	silver quality
muscle of leg	UBERON:0001383	55.89	gold quality
mucosa of paranasal sinus	UBERON:0005030	55.61	gold quality
subthalamic nucleus	UBERON:0001906	55.60	gold quality
ventral tegmental area	UBERON:0002691	54.99	gold quality
gastrocnemius	UBERON:0001388	54.84	gold quality
cortex of kidney	UBERON:0001225	54.69	gold quality
pylorus	UBERON:0001166	54.67	gold quality
caecum	UBERON:0001153	54.57	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.