LINC02142

Summary

LINC02142 (long intergenic non-protein coding RNA 2142, HGNC:53002) is a long non-coding RNA gene on chromosome 5p15.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53002
Approved symbol	LINC02142
Name	long intergenic non-protein coding RNA 2142
Location	5p15.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223597
Ensembl biotype	lncRNA
Entrez	105374644
RNAcentral	URS00026A2320 — lncRNA, 1192 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000500616, ENST00000504494, ENST00000512746, ENST00000650000, ENST00000650671, ENST00000655220, ENST00000657298, ENST00000715908, ENST00000715909, ENST00000773890, ENST00000773891, ENST00000838839, ENST00000838840, ENST00000838841, ENST00000838842, ENST00000838843, ENST00000838844, ENST00000838845, ENST00000838846, ENST00000838847, ENST00000838848, ENST00000838849, ENST00000838850, ENST00000838851, ENST00000838852, ENST00000838853, ENST00000838854

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000500616 — 2 exons

Exon	Start	End
ENSE00004139324	7373117	7373515
ENSE00004139327	7379613	7379808

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 83.99.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0144 / max 15.3369, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
55653	0.0144	3

Top tissues by expression

95 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.99	gold quality
right testis	UBERON:0004534	79.17	gold quality
testis	UBERON:0000473	77.26	gold quality
left testis	UBERON:0004533	77.18	gold quality
ventricular zone	UBERON:0003053	62.66	gold quality
ganglionic eminence	UBERON:0004023	62.42	gold quality
calcaneal tendon	UBERON:0003701	60.15	gold quality
gall bladder	UBERON:0002110	58.04	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.01	gold quality
skeletal muscle tissue	UBERON:0001134	57.61	gold quality
muscle of leg	UBERON:0001383	56.22	gold quality
gastrocnemius	UBERON:0001388	55.96	gold quality
fundus of stomach	UBERON:0001160	55.83	gold quality
lymph node	UBERON:0000029	55.70	gold quality
monocyte	CL:0000576	55.41	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.58	gold quality
blood	UBERON:0000178	53.04	gold quality
liver	UBERON:0002107	51.07	silver quality
prefrontal cortex	UBERON:0000451	50.12	gold quality
placenta	UBERON:0001987	49.38	gold quality
multicellular organism	UBERON:0000468	49.19	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.58	gold quality
islet of Langerhans	UBERON:0000006	48.48	gold quality
superior frontal gyrus	UBERON:0002661	45.65	silver quality
right adrenal gland cortex	UBERON:0035827	44.68	silver quality
frontal cortex	UBERON:0001870	44.52	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.52	silver quality
heart left ventricle	UBERON:0002084	44.47	silver quality
tibial artery	UBERON:0007610	44.14	silver quality
myometrium	UBERON:0001296	44.11	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.