LINC02143

Summary

LINC02143 (long intergenic non-protein coding RNA 2143, HGNC:53003) is a long non-coding RNA gene on chromosome 5q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53003
Approved symbol	LINC02143
Name	long intergenic non-protein coding RNA 2143
Location	5q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253236
Ensembl biotype	lncRNA
Entrez	101927835
RNAcentral	URS00003BD32C — lncRNA, 520 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000519929, ENST00000767792, ENST00000767793, ENST00000767794, ENST00000767795, ENST00000767796, ENST00000767798, ENST00000767799

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000519929 — 4 exons

Exon	Start	End
ENSE00002096776	164464799	164464862
ENSE00002104922	164449232	164449413
ENSE00002124450	164448161	164448639
ENSE00002131961	164467347	164467879

Expression profiles

Bgee: expression breadth broad, 28 present calls, max score 60.90.

Top tissues by expression

28 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	60.90	gold quality
testis	UBERON:0000473	60.28	gold quality
right testis	UBERON:0004534	59.41	gold quality
multicellular organism	UBERON:0000468	56.09	gold quality
monocyte	CL:0000576	53.28	silver quality
heart	UBERON:0000948	50.91	gold quality
pancreas	UBERON:0001264	50.63	silver quality
kidney	UBERON:0002113	49.71	silver quality
islet of Langerhans	UBERON:0000006	49.21	silver quality
blood	UBERON:0000178	48.35	silver quality
body of pancreas	UBERON:0001150	47.28	gold quality
stomach	UBERON:0000945	46.94	silver quality
prefrontal cortex	UBERON:0000451	46.17	silver quality
primary visual cortex	UBERON:0002436	45.93	silver quality
intestine	UBERON:0000160	45.63	silver quality
gastrocnemius	UBERON:0001388	45.26	gold quality
small intestine	UBERON:0002108	44.97	silver quality
superior frontal gyrus	UBERON:0002661	44.13	silver quality
prostate gland	UBERON:0002367	42.13	silver quality
brain	UBERON:0000955	40.91	silver quality
right frontal lobe	UBERON:0002810	40.76	silver quality
tibial artery	UBERON:0007610	40.72	silver quality
skin of leg	UBERON:0001511	40.64	gold quality
putamen	UBERON:0001874	39.97	silver quality
nucleus accumbens	UBERON:0001882	38.97	silver quality
caudate nucleus	UBERON:0001873	38.77	silver quality
pituitary gland	UBERON:0000007	38.70	silver quality
tibial nerve	UBERON:0001323	28.31	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.