LINC02144

Summary

LINC02144 (long intergenic non-protein coding RNA 2144, HGNC:53004) is a long non-coding RNA gene on chromosome 5q14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53004
Approved symbol	LINC02144
Name	long intergenic non-protein coding RNA 2144
Location	5q14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248708
Ensembl biotype	lncRNA
Entrez	105379069
RNAcentral	URS00026A27FC — lncRNA, 823 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000511417, ENST00000815573, ENST00000815574

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000511417 — 6 exons

Exon	Start	End
ENSE00002060721	87733015	87733269
ENSE00002064199	87713135	87713308
ENSE00002074445	87715472	87715634
ENSE00003862666	87665345	87665385
ENSE00003877599	87669610	87669734
ENSE00003881816	87680526	87680682

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 69.77.

Top tissues by expression

62 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	69.77	gold quality
ventricular zone	UBERON:0003053	66.53	gold quality
cortical plate	UBERON:0005343	63.46	gold quality
ganglionic eminence	UBERON:0004023	62.78	gold quality
thyroid gland	UBERON:0002046	55.13	gold quality
tibial nerve	UBERON:0001323	53.78	silver quality
monocyte	CL:0000576	53.56	silver quality
prefrontal cortex	UBERON:0000451	51.55	gold quality
blood	UBERON:0000178	51.12	gold quality
superior frontal gyrus	UBERON:0002661	51.04	gold quality
endometrium	UBERON:0001295	48.83	gold quality
frontal cortex	UBERON:0001870	47.30	gold quality
smooth muscle tissue	UBERON:0001135	47.26	gold quality
left adrenal gland cortex	UBERON:0035825	46.95	gold quality
cerebellar cortex	UBERON:0002129	46.25	silver quality
primary visual cortex	UBERON:0002436	45.98	silver quality
ectocervix	UBERON:0012249	45.93	gold quality
cerebellar hemisphere	UBERON:0002245	45.88	silver quality
body of pancreas	UBERON:0001150	45.48	silver quality
heart	UBERON:0000948	45.41	gold quality
cerebral cortex	UBERON:0000956	44.98	gold quality
upper lobe of left lung	UBERON:0008952	44.88	gold quality
gastrocnemius	UBERON:0001388	44.62	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.56	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.51	silver quality
brain	UBERON:0000955	44.38	gold quality
amygdala	UBERON:0001876	43.77	gold quality
corpus callosum	UBERON:0002336	43.36	silver quality
nucleus accumbens	UBERON:0001882	43.27	silver quality
anterior cingulate cortex	UBERON:0009835	43.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.