LINC02146

Summary

LINC02146 (long intergenic non-protein coding RNA 2146, HGNC:53006) is a long non-coding RNA gene on chromosome 5p14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53006
Approved symbol	LINC02146
Name	long intergenic non-protein coding RNA 2146
Location	5p14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249490
Ensembl biotype	lncRNA
Entrez	105374677
RNAcentral	URS0000BC4468 — lncRNA, 517 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000504244, ENST00000657947, ENST00000659986, ENST00000664531, ENST00000668626

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504244 — 2 exons

Exon	Start	End
ENSE00002033653	20614677	20614765
ENSE00002040940	20612625	20613044

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 80.93.

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.93	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.89	gold quality
bone marrow	UBERON:0002371	60.21	gold quality
monocyte	CL:0000576	55.45	gold quality
blood	UBERON:0000178	53.44	gold quality
testis	UBERON:0000473	53.03	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.70	gold quality
left testis	UBERON:0004533	52.58	gold quality
lymph node	UBERON:0000029	52.51	gold quality
right testis	UBERON:0004534	51.12	gold quality
islet of Langerhans	UBERON:0000006	50.98	gold quality
muscle of leg	UBERON:0001383	49.20	gold quality
cerebellar cortex	UBERON:0002129	48.91	silver quality
kidney	UBERON:0002113	48.16	gold quality
adrenal tissue	UBERON:0018303	48.00	silver quality
gastrocnemius	UBERON:0001388	47.81	silver quality
adult mammalian kidney	UBERON:0000082	47.39	gold quality
right lobe of liver	UBERON:0001114	46.83	silver quality
prefrontal cortex	UBERON:0000451	46.75	silver quality
heart left ventricle	UBERON:0002084	46.62	gold quality
multicellular organism	UBERON:0000468	46.11	gold quality
right coronary artery	UBERON:0001625	45.06	gold quality
esophagus mucosa	UBERON:0002469	44.78	gold quality
amygdala	UBERON:0001876	44.64	gold quality
esophagus	UBERON:0001043	44.25	gold quality
thoracic aorta	UBERON:0001515	44.15	silver quality
vagina	UBERON:0000996	43.84	gold quality
gall bladder	UBERON:0002110	43.82	silver quality
ascending aorta	UBERON:0001496	43.77	silver quality
prostate gland	UBERON:0002367	43.66	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.